PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_F258582BB.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 167aa    MW: 17869.5 Da    PI: 10.8033
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_F258582BB.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.41.1e-192761135
                   GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                           C+ C+ttkTplWR gp+g+ +LCnaCG++yrkk++
  Traes_5BL_F258582BB.1 27 CTACNTTKTPLWRGGPSGPMSLCNACGIRYRKKRR 61
                           ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.52E-142060No hitNo description
SMARTSM004013.5E-152174IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.5852157IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-152261IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.96E-142674No hitNo description
PfamPF003202.4E-172761IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MSSSVEKGSG SLDPGERPAA GSQPKACTAC NTTKTPLWRG GPSGPMSLCN ACGIRYRKKR  60
REAMGLEDPP KKRQPAAAAA PAAAAVACSE AGGESADPEQ QQQPPQQQPK KKTTTTKRGR  120
EVELRVVGFG KEVVLKQRRR MRRRPRLGEE EKAAILLMAL SSGVIYG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136142QRRRMRR
2138143RRMRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3709090.0AK370909.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2120C01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169086.12e-78GATA transcription factor 15-like
TrEMBLA0A3B6LX431e-115A0A3B6LX43_WHEAT; Uncharacterized protein
STRINGTraes_5BL_F258582BB.11e-116(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.16e-22GATA transcription factor 15
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]