PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5BL_F3018E8CA.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bZIP

Protein Properties

Length: 278aa MW: 29142.1 Da PI: 9.6151

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BL_F3018E8CA.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	77.3	1.9e-24	172	235	1	64
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv eL+a N +L++el++lkk ++++++e++ Traes_5BL_F3018E8CA.1 172 ERELKRERRKQSNRESARRSRLRKQQECEELAQKVSELTAANGTLRSELDQLKKDCKTMETENK 235 89*********************************************************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.3E-18	165	232	No hit	No description
Pfam	PF00170	2.9E-22	172	235	IPR004827	Basic-leucine zipper domain
SMART	SM00338	8.8E-22	172	236	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	13.082	174	237	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.22E-11	175	230	No hit	No description
CDD	cd14702	1.75E-18	177	227	No hit	No description
PROSITE pattern	PS00036	0	179	194	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MYHHPAAAYY AHAHASMAAG VPYMAGESAS AAGKGKRAGK TRRVPSGEIN SSSGSGDAGS 60 QGSSEKGNAG ANQKGSSSSA KRRKSGAANT EGEPSQATTV QNAVTEPPLE DKERSASKLL 120 VLAPGRAALT SAAPNLNIGM DPLSASPSSL VQGEVNAAAS SQSNASLSQM DERELKRERR 180 KQSNRESARR SRLRKQQECE ELAQKVSELT AANGTLRSEL DQLKKDCKTM ETENKQLMGK 240 ILSHDDKMQQ SEGPSVVTTL SIQVEAPDPH QGGDGKAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	188	194	RRSRLRK
2	188	195	RRSRLRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Interacts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	TAU07933	0.0	U07933.1 Triticum aestivum Chinese spring DNA-Binding protein (EmBP-1a) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020175793.1	1e-147	DNA-binding protein EMBP-1
Swissprot	P25032	1e-154	EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBL	A0A3B6LVV7	0.0	A0A3B6LVV7_WHEAT; DNA-Binding protein
TrEMBL	Q41508	0.0	Q41508_WHEAT; DNA-Binding protein
STRING	Traes_5BL_F3018E8CA.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2160	36	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35530.1	1e-24	basic region/leucine zipper transcription factor 16

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]