PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_F55507EA2.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 80aa    MW: 9373.37 Da    PI: 8.0854
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_F55507EA2.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.25.9e-083257126
                           --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                           +++++C++++r G+Ck+  +Ck++H+
  Traes_5BL_F55507EA2.1 32 PGEPECNHYMRQGYCKFQMNCKYHHP 57
                           5899*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.9253159IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-53357IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-63461IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-43756IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
DKRSGSGVYD SLTRSDNGVE QQEESIMYPE RPGEPECNHY MRQGYCKFQM NCKYHHPGDR  60
LSKKHEVIRS DHLSKAGTRW
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3692023e-64AK369202.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2086J19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181184.18e-41uncharacterized protein LOC109766829
SwissprotQ84W912e-14C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A446KFB01e-48A0A446KFB0_TRITD; Uncharacterized protein
STRINGTraes_5BL_F55507EA2.18e-55(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2038288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.25e-17C3H family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]