PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_F5D379AFC.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 242aa    MW: 25664.5 Da    PI: 6.2408
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_F5D379AFC.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.51.1e-20105154255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             y+GVr+++ +g+W+AeIrdp+    r  r +lg+f+tae+Aa+a++ a+++++g
  Traes_5BL_F5D379AFC.1 105 VYRGVRQRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEDAARAYDLAALEFRG 154
                            69*******.**********82....48*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-14105154IPR001471AP2/ERF domain
PROSITE profilePS5103225.383105162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-32105163IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-23105163IPR016177DNA-binding domain
SMARTSM003802.3E-38105168IPR001471AP2/ERF domain
PRINTSPR003672.7E-11106117IPR001471AP2/ERF domain
CDDcd000185.35E-30106162No hitNo description
PRINTSPR003672.7E-11128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MAMATANQDG AATFHDHRGG TAATELHGRT ISSEQEHGII VAALRHVVSG YTTAPPEVVV  60
AVACGRCGID GCLGCDFFGA TEPEAVAVAV PVGGVQRKRR RKKNVYRGVR QRPWGKWAAE  120
IRDPRRAVRK WLGTFDTAED AARAYDLAAL EFRGPRARLN FPCSDEPLPG HGSDNGGGGT  180
GAAPQNETLT TPSPCSTDAG QRTPGEWQLG ADGAGDQVWE GLQDLMTIDG QDPWFAPFSS  240
PA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-21106163664ATERF1
3gcc_A9e-21106163664ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196100RKRRR
296102RKRRRKK
396103RKRRRKKN
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3674800.0AK367480.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2057P20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177674.11e-140ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ063e-30EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A3B6LN021e-176A0A3B6LN02_WHEAT; Uncharacterized protein
TrEMBLA0A446UBU21e-176A0A446UBU2_TRITD; Uncharacterized protein
STRINGTraes_5BL_F5D379AFC.11e-177(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.13e-22redox responsive transcription factor 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  3. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  4. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  5. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  6. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]