PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_FCB1625F3.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 569aa    MW: 59756.8 Da    PI: 7.8707
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_FCB1625F3.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.65.4e-35441352102
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k+y+++ed++++++isw e+g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g
  Traes_5BL_FCB1625F3.1  44 FLTKTYQLVEDPAVDDVISWGEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRG 122
                            9*****************************************************************99.........*********** PP

                            XXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkks 102
                            +k+ll++i+r+k 
  Traes_5BL_FCB1625F3.1 123 EKRLLCDIHRRKV 135
                            **********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-3736128IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.0E-5940133IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.09E-3441133IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.5E-204467IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-3144133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-208294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-2095107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MAAEHGAAAA AADRAGAEPP PPAPMPGLVA SVDAAGQRSL PTPFLTKTYQ LVEDPAVDDV  60
ISWGEDGSTF VVWRPAEFAR DLLPKYFKHN NFSSFVRQLN TYGFRKIVPD RWEFANDCFR  120
RGEKRLLCDI HRRKVVQSAG LAAAAAAAAA GAVTVATAAI PMALPVTRSG SPEPQLSSEE  180
QVLSSNSGSA EELPPAAPSG SGSGLGGAAA GSSSGDMGEE NDRLRRDNAR LTRELGQMKK  240
LCNNIVSLMS KFASSQQPDG GPGSLSSVVN CSGESALAPP PPLPAGILDL MPSCSALATA  300
AGLAVDGGPE TDARLFGVSI GLKRARDEEE DGEGEELPNS NGDGADVKPE EAANRRPDGG  360
SEDRQSWPIY RPKPVYRACN GQDGAGAGSG SDQDRSNSRE PCVAAAVGNH RRSLEKAAAM  420
GMAPGGRAGE CRMSNSGGGG VLCVGHTRSG RRQGCSAWCT RRRTTMWRRS GNRASAPRLR  480
GRTEKGAAPA LGRRTLSFEP LRTATMEPQV VRLSAAAQDA AAGFRHDIRP CVAAVRRRPE  540
VWTSCGEALS AQDAVYCSEF QWTKCSEIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-263513312120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3541330.0AK354133.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1005E13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163127.10.0heat stress transcription factor B-2c-like
SwissprotQ652B01e-132HFB2C_ORYSJ; Heat stress transcription factor B-2c
TrEMBLA0A3B6LR000.0A0A3B6LR00_WHEAT; Uncharacterized protein
STRINGTraes_5BL_FCB1625F3.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.12e-73HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Rerksiri W,Zhang X,Xiong H,Chen X
    Expression and promoter analysis of six heat stress-inducible genes in rice.
    ScientificWorldJournal, 2013. 2013: p. 397401
    [PMID:24459431]