PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_FCF62F21B.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family DBB
Protein Properties Length: 211aa    MW: 23088.7 Da    PI: 6.3019
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_FCF62F21B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.64.6e-07333434
               zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                           ++C+ +e+  + lfC  ++  lC+ C ++ H
  Traes_5BL_FCF62F21B.1  3 TICDVCESAVAVLFCAADEAALCRPCDEKVH 33
                           68**************************998 PP
2zf-B_box25.23.4e-085291237
               zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                           +  +C+ +e+ ++ ++C  +++ lC +C ++ H g    H
  Traes_5BL_FCF62F21B.1 52 KLVRCDICESSPAFFYCDIDGTSLCLSCDMAVHVGgkrtH 91
                           6789****************************96655556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.1E-9147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.04147IPR000315B-box-type zinc finger
CDDcd000213.14E-7345No hitNo description
PfamPF006432.9E-5341IPR000315B-box-type zinc finger
SMARTSM003361.3E-105196IPR000315B-box-type zinc finger
PROSITE profilePS501199.6415196IPR000315B-box-type zinc finger
PfamPF006436.1E-65291IPR000315B-box-type zinc finger
CDDcd000213.45E-65484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MRTICDVCES AVAVLFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLADP NKLVRCDICE  60
SSPAFFYCDI DGTSLCLSCD MAVHVGGKRT HGRYLLLRQR VEFPGDKPGH MDDVAMQQME  120
SENPRDQNNA HSVAKEQMVN HHHNAYDPAS DGNCNGQGAI DSKMFDLNMR PARNNGQGSS  180
SQTHGVDHSH NNNHDSSGVV PTCNYDGATD K
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3741330.0AK374133.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3055F19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148445.11e-154B-box zinc finger protein 18-like
SwissprotC0SVM51e-73BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A3B6LPJ31e-156A0A3B6LPJ3_WHEAT; Uncharacterized protein
TrEMBLA0A446UGZ81e-156A0A446UGZ8_TRITD; Uncharacterized protein
STRINGTraes_5BL_FCF62F21B.11e-156(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103342225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.16e-76DBB family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]