PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BS_03C103140.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 119aa    MW: 13486.3 Da    PI: 4.207
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BS_03C103140.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.22.3e-1624991798
                           E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                     B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                            +p +fa+++ g+   s +++le ++g+ ++v++   + +++ vl++GW +F+ a +L++g f+vF ++g+s f  +v++f+
  Traes_5BS_03C103140.1 24 AIPEEFATNFRGD--ISDEVKLEVPNGKIYNVQV--AREQEKLVLQSGWTKFACAFELEQGYFLVFIYSGDSHF--KVQIFK 99
                           59*****999777..6779***************..**********************************9999..999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.8E-818101IPR003340B3 DNA binding domain
SuperFamilySSF1019361.12E-1921103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.3E-2023103IPR015300DNA-binding pseudobarrel domain
PfamPF023625.1E-142499IPR003340B3 DNA binding domain
PROSITE profilePS5086311.32125101IPR003340B3 DNA binding domain
CDDcd100174.97E-172599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
QSLNLVCGDW LVDDPLSFFF FIQAIPEEFA TNFRGDISDE VKLEVPNGKI YNVQVAREQE  60
KLVLQSGWTK FACAFELEQG YFLVFIYSGD SHFKVQIFKP NGCEKELACV MTSCGPNAE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161806.13e-41B3 domain-containing protein Os12g0591400-like isoform X2
SwissprotQ2QMT75e-32Y1214_ORYSJ; B3 domain-containing protein Os12g0591400
TrEMBLA0A453JTI62e-42A0A453JTI6_AEGTS; Uncharacterized protein
STRINGTraes_5BS_03C103140.12e-83(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-13B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]