PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BS_1751C4BBF.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 253aa    MW: 28047.1 Da    PI: 4.5705
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BS_1751C4BBF.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.81.5e-22119240290
                   FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................................tekerrtr 55 
                             Yn+YA ++GFs+++++ +k  ++g  +k++fvC+k  k+e ++                                    ++k+r++ 
  Traes_5BS_1751C4BBF.2 119 HYNAYALQIGFSIKMNTLRKAVKTGVLIKQQFVCNKFRKPEADDGGaekipvlddiveqtkdddededivfldddnktkkRSKKRKRD 206
                            6************************************99999988899****************************999888888899 PP

                   FAR1  56 aetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                            +  +t+Ckak++vk+  dg+wev+ ++ eHnH+l+
  Traes_5BS_1751C4BBF.2 207 KIVQTSCKAKMVVKLI-DGRWEVIYFVGEHNHPLV 240
                            999*************.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-20119240IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MIDLNEEPDD MDIGDPVNST QQAAQNPELT GDSPTPHIVQ NATAPVAKTV ETDEQAPAAQ  60
ESETDGHTLD GTDVAGDTSV TVGNGLTGFG AENDEEAWSQ PKEPHVGMRF DTLEGAKEHY  120
NAYALQIGFS IKMNTLRKAV KTGVLIKQQF VCNKFRKPEA DDGGAEKIPV LDDIVEQTKD  180
DDEDEDIVFL DDDNKTKKRS KKRKRDKIVQ TSCKAKMVVK LIDGRWEVIY FVGEHNHPLV  240
DKPSLTKYLR SHQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194049.14e-66protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A446U0K40.0A0A446U0K4_TRITD; Uncharacterized protein
STRINGTraes_5BS_1751C4BBF.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP9528843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-14FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]