PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5BS_31CD3BB2E.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB_related

Protein Properties

Length: 1169aa MW: 129361 Da PI: 9.3459

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BS_31CD3BB2E.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.6	1.2e-07	45	80	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W+++E e+++ a +++G++ W+++a + Rt ++ Traes_5BS_31CD3BB2E.1 45 QWSKDELERFYAAYRKYGKD-WRKVAGAVH-DRTSDMV 80 6***************99.****999.9997665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.64E-9	38	89	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.5E-5	45	84	IPR009057	Homeodomain-like
Pfam	PF00249	5.2E-6	45	84	IPR001005	SANT/Myb domain
CDD	cd00167	3.92E-4	46	80	No hit	No description
SMART	SM01135	6.4E-58	652	753	IPR033471	DIRP domain
Pfam	PF06584	1.3E-33	652	752	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1169 aa Download sequence Send to blast
MSSTRKVRNV NKRYAKINED WPEKDATVVQ KNKVRKKKLS DLGSQWSKDE LERFYAAYRK 60 YGKDWRKVAG AVHDRTSDMV EALYNMNRAY LSLPEGTATA AGLIAMMTDH YNILDGSNSD 120 HESNGSPKTS RKPQKRGRAK LQSVSKASDT RYPDLLQSQP ASSSYGCLSL LKKKRSGDLF 180 VGNKPRAVGK RTPRVPVASM YHRDDKAGPS NRQAKPDANN GDEEGALAAL ALAEVCQRGS 240 PQVSQTSGRS SGQLFLSPGK SIDRKNADSE MGSSKMHGFQ VDTDYPEGSL GSREAETADY 300 PKDASYFLNN EGSASGKSKP KVKRSQKRRK KAAHKTDDQF EDDREACSGT EEGCSSRKAK 360 DISELDVFGS KGSWPSNKSN KRSRQLFFGD ELSALDALHT LADISVNILQ PSSIAESESS 420 AQFKDGSKDN ESDDKPSVPA AVSLFDKKDK PRKTKKIKRQ SEIASNEVVT RKKARLSKDH 480 HHDGSTSEVK QDDCKCGVKM EKKKRKSSTL KISKDEKNTL KDSEKTEASA EEGKVSSNKG 540 RHAHVSPVSK QNKSKAQESS PAHADFGKEA MDAVDTTENA ITQQSDSASK SKSRRKLGIL 600 KALAPESKPA EGADDSCDNV SYPVNNAIEL KDKLSHCLSS RFLRRWCMSE WFYSAIDYPW 660 FAKSEFVEYL NHVKLGHVPR LTRVEWGVIR SSLGKPRRLS KQFLQEEREK LSQYRESVRQ 720 HYAELQSGVR EGLPTDLARP LAVGQRVIAC HPKTRELHDG SVLTVDRNRC RVQFDRPELG 780 VEFVMDIDCM PLHPLENFPE SLRRQNIVNK YYSSFSEVKF EDRSKEYGGG GAPRFIANGD 840 AFDSTAQAKT TANEATVAAH QAMYGQPCTL SQIQEREADI RALAELSRAL DKKEALLVEL 900 RHMNEEVSGK QKDGEIIRDL EHFRKQYAMV LVQLRDSNDH VASALLCLRQ RNTFHGQPTQ 960 SYPNKSTENG GAFNRTPDPS SNLFGYINQE SGSQVMEIIE TSRSKAKTMV DVAVQAMCKV 1020 SEGENAFAKI GEALDNLNLR GTGSGSSILG IRRIPPDSGQ ANSDNSAAGR FDPAAAANNI 1080 SSPRVLPNGS DSDAQFPSEL ISSCVATILM IQNCTEKQYH PAEVAHILDS ALSRLQPCSS 1140 QNVPIFREIE MCMGIIKNQM LALIPTPSG

Sequence ? help Back to Top

Protein Sequence Length: 1169 aa Download sequence Send to blast

MSSTRKVRNV NKRYAKINED WPEKDATVVQ KNKVRKKKLS DLGSQWSKDE LERFYAAYRK  60
YGKDWRKVAG AVHDRTSDMV EALYNMNRAY LSLPEGTATA AGLIAMMTDH YNILDGSNSD  120
HESNGSPKTS RKPQKRGRAK LQSVSKASDT RYPDLLQSQP ASSSYGCLSL LKKKRSGDLF  180
VGNKPRAVGK RTPRVPVASM YHRDDKAGPS NRQAKPDANN GDEEGALAAL ALAEVCQRGS  240
PQVSQTSGRS SGQLFLSPGK SIDRKNADSE MGSSKMHGFQ VDTDYPEGSL GSREAETADY  300
PKDASYFLNN EGSASGKSKP KVKRSQKRRK KAAHKTDDQF EDDREACSGT EEGCSSRKAK  360
DISELDVFGS KGSWPSNKSN KRSRQLFFGD ELSALDALHT LADISVNILQ PSSIAESESS  420
AQFKDGSKDN ESDDKPSVPA AVSLFDKKDK PRKTKKIKRQ SEIASNEVVT RKKARLSKDH  480
HHDGSTSEVK QDDCKCGVKM EKKKRKSSTL KISKDEKNTL KDSEKTEASA EEGKVSSNKG  540
RHAHVSPVSK QNKSKAQESS PAHADFGKEA MDAVDTTENA ITQQSDSASK SKSRRKLGIL  600
KALAPESKPA EGADDSCDNV SYPVNNAIEL KDKLSHCLSS RFLRRWCMSE WFYSAIDYPW  660
FAKSEFVEYL NHVKLGHVPR LTRVEWGVIR SSLGKPRRLS KQFLQEEREK LSQYRESVRQ  720
HYAELQSGVR EGLPTDLARP LAVGQRVIAC HPKTRELHDG SVLTVDRNRC RVQFDRPELG  780
VEFVMDIDCM PLHPLENFPE SLRRQNIVNK YYSSFSEVKF EDRSKEYGGG GAPRFIANGD  840
AFDSTAQAKT TANEATVAAH QAMYGQPCTL SQIQEREADI RALAELSRAL DKKEALLVEL  900
RHMNEEVSGK QKDGEIIRDL EHFRKQYAMV LVQLRDSNDH VASALLCLRQ RNTFHGQPTQ  960
SYPNKSTENG GAFNRTPDPS SNLFGYINQE SGSQVMEIIE TSRSKAKTMV DVAVQAMCKV  1020
SEGENAFAKI GEALDNLNLR GTGSGSSILG IRRIPPDSGQ ANSDNSAAGR FDPAAAANNI  1080
SSPRVLPNGS DSDAQFPSEL ISSCVATILM IQNCTEKQYH PAEVAHILDS ALSRLQPCSS  1140
QNVPIFREIE MCMGIIKNQM LALIPTPSG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	318	330	KPKVKRSQKRRKK
2	321	327	VKRSQKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK365864	0.0	AK365864.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2038G06.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020183561.1	0.0	protein ALWAYS EARLY 2-like isoform X1
TrEMBL	A0A3B6LEQ9	0.0	A0A3B6LEQ9_WHEAT; Uncharacterized protein
TrEMBL	A0A446TSK1	0.0	A0A446TSK1_TRITD; Uncharacterized protein
STRING	Traes_5BS_31CD3BB2E.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6230	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]