PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BS_4179BB1C5.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LSD
Protein Properties Length: 197aa    MW: 20831.3 Da    PI: 8.4389
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BS_4179BB1C5.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD140.35e-132549125
                zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                           C+gCr +L YPrGApsV+Ca+C++V
  Traes_5BS_4179BB1C5.1 25 CHGCRSVLLYPRGAPSVCCAVCHAV 49
                           ************************9 PP
2zf-LSD142.41.1e-136488125
                zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                           C gCrtlL+Y+r+A+ VRC++CdtV
  Traes_5BS_4179BB1C5.1 64 CVGCRTLLMYTRNATTVRCSCCDTV 88
                           ************************9 PP
3zf-LSD148.81.2e-15105129125
                zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                            Cg+C+t+L+YP+GA+sV+Ca+C+++
  Traes_5BS_4179BB1C5.1 105 CGQCQTVLMYPYGASSVKCAICNFI 129
                            ***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010535.5E-122250IPR005735Zinc finger, LSD1-type
PfamPF069431.5E-102549IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.3E-136190IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-106488IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.8E-12102131IPR005735Zinc finger, LSD1-type
PfamPF069436.1E-14105129IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MENSLTPRLD WLGRNFAGMQ SQIVCHGCRS VLLYPRGAPS VCCAVCHAVT NAPPPGMEMA  60
QLICVGCRTL LMYTRNATTV RCSCCDTVNL ARPAPPVNSI AHVNCGQCQT VLMYPYGASS  120
VKCAICNFIT NIGMNTVRPL PPTMHAPNGI SYSVPSTSAP SAQSQNVTVV VENPMTVDDK  180
GKLVSNVVVG VTSGGKK
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1355800.0JX135580.1 Triticum aestivum cultivar Suwon11 LOL2 (LOL2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198652.11e-126protein LOL2-like
SwissprotQ2QMB35e-99LOL2_ORYSJ; Protein LOL2
TrEMBLA0A446TVE91e-141A0A446TVE9_TRITD; Uncharacterized protein
STRINGTraes_5BS_4179BB1C5.11e-142(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.15e-53lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]