PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BS_938D6B791.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 477aa    MW: 51907 Da    PI: 9.3815
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BS_938D6B791.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA35.41.4e-11141175135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C +C++ +Tp+ R+gp g  tLCnaCG+ y k+g+
  Traes_5BS_938D6B791.1 141 CLHCKAVETPQRRSGPMGRGTLCNACGVWYSKNGT 175
                            99******************************997 PP
2GATA28.22.5e-09231265135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C +Cg+++ plW +g+   +++C aCG++y+k +l
  Traes_5BS_938D6B791.1 231 CLHCGSSEPPLWIEGSMRRREVCTACGMRYKKGRL 265
                            99**************99999***********986 PP
3GATA55.11e-17335369135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C++Cg+++Tp+WR+gp g  tLCnaCG++yr  +l
  Traes_5BS_938D6B791.1 335 CQHCGSSETPQWREGPKGRATLCNACGVRYRQGRL 369
                            *******************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.2E-7135189IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.275135174IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-10138176No hitNo description
Gene3DG3DSA:3.30.50.105.8E-11139175IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.60E-8140186No hitNo description
PfamPF003201.4E-8141175IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.9E-6224264No hitNo description
SMARTSM004017.9E-5225275IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.723225261IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.6E-7226263IPR013088Zinc finger, NHR/GATA-type
PfamPF003205.2E-8231265IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-14327391No hitNo description
PROSITE profilePS5011412.756329365IPR000679Zinc finger, GATA-type
SMARTSM004012.0E-16329383IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.0E-14333367IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.81E-13334381No hitNo description
PROSITE patternPS003440335360IPR000679Zinc finger, GATA-type
PfamPF003201.0E-15335369IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MATAEEGERG EPPGLGRGRC PRFRRSEATR DMAGGGGAGG KEDGGTEPLL LSVLALPATA  60
LPAVVSRLEA AVPRKARSYL PRNVPSAWWS LRIPFIQPLP PAGDPANEEE GRRFPRPQRV  120
QVAPSLDPGT ADKPPKRLKR CLHCKAVETP QRRSGPMGRG TLCNACGVWY SKNGTLPEHL  180
PVASPIVDSP LENPIWEPEV PGAIYLVRKS ATERMPPRTE AAPAPRPGTS CLHCGSSEPP  240
LWIEGSMRRR EVCTACGMRY KKGRLLPECR PAECSVTDSR QESPVINSPP ESPIWEPEAP  300
PSVHLPRKPS KKKKRRRSRS EAPSAPWPAN KGKRCQHCGS SETPQWREGP KGRATLCNAC  360
GVRYRQGRLL PEYRPMASPT FVPTKHANSH RKVLQLHRTR QSNDEHPSPL PADSVTNLPP  420
IRDELPTTST AGLASEDPTD APGYTDNPIN VPSSLDSLLL DGPSAPLIVE SEDFAIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310315KKKKRR
2310316KKKKRRR
3311316KKKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3550520.0AK355052.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1015E18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152088.10.0uncharacterized protein LOC109737355 isoform X1
TrEMBLA0A3B6LIN30.0A0A3B6LIN3_WHEAT; Uncharacterized protein
STRINGTraes_5BL_852C30796.10.0(Triticum aestivum)
STRINGTraes_5BS_938D6B791.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72732646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-30GATA transcription factor 9
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]