PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BS_A19FD8E34.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 57aa    MW: 6557.62 Da    PI: 10.0428
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BS_A19FD8E34.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.63.4e-281357145
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                           krien++ rqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+
  Traes_5BS_A19FD8E34.1 13 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGR 57
                           79****************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.81557IPR002100Transcription factor, MADS-box
SMARTSM004326.3E-32557IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-27556IPR002100Transcription factor, MADS-box
CDDcd002657.88E-34657No hitNo description
PRINTSPR004041.6E-29727IPR002100Transcription factor, MADS-box
PfamPF003192.3E-251457IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-292742IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-294257IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 57 aa     Download sequence    Send to blast
EEVEMGRGRI EIKRIENTTS RQVTFCKRRN GLLKKAYELS VLCDAEVALI VFSSRGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-18557153Myocyte-specific enhancer factor 2B
1tqe_Q5e-18557153Myocyte-specific enhancer factor 2B
1tqe_R5e-18557153Myocyte-specific enhancer factor 2B
1tqe_S5e-18557153Myocyte-specific enhancer factor 2B
6c9l_A5e-18557153Myocyte-specific enhancer factor 2B
6c9l_B5e-18557153Myocyte-specific enhancer factor 2B
6c9l_C5e-18557153Myocyte-specific enhancer factor 2B
6c9l_D5e-18557153Myocyte-specific enhancer factor 2B
6c9l_E5e-18557153Myocyte-specific enhancer factor 2B
6c9l_F5e-18557153Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58. {ECO:0000269|PubMed:11828031, ECO:0000269|PubMed:16326928, ECO:0000269|PubMed:9869408}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM5028641e-90AM502864.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM3A (WM3A gene).
GenBankBT0089471e-90BT008947.1 Triticum aestivum clone wdk1c.pk007.n22:fis, full insert mRNA sequence.
GenBankDQ5123491e-90DQ512349.1 Triticum aestivum MADS-box transcription factor TaAGL31 (AGL31) mRNA, complete cds.
GenBankDQ5123641e-90DQ512364.1 Triticum aestivum MADS-box transcription factor TaAGL9 (AGL9) mRNA, complete cds.
GenBankKF7616681e-90KF761668.1 Triticum aestivum cultivar Triple Dirk F-Japan line MADS-box transcription factor AGL31 (AGL31) gene, exons 1, 2, and 5 through 7, promoter region and partial cds.
GenBankKF7616691e-90KF761669.1 Triticum aestivum cultivar Hayakomugi MADS-box transcription factor AGL31 (AGL31) gene, exons 1, 2, and 5 through 7, promoter region and partial cds.
GenBankKF7616701e-90KF761670.1 Triticum aestivum cultivar Triple Dirk C line MADS-box transcription factor AGL31 (AGL31) gene, exons 1, 2, and 5 through 7, promoter region and partial cds.
GenBankKF7616711e-90KF761671.1 Triticum aestivum cultivar Chinese Spring Synthetic 5402 line MADS-box transcription factor AGL31 (AGL31) gene, exons 1, 2, and 5 through 7, promoter region and partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007146364.12e-30hypothetical protein PHAVU_006G034400g
RefseqXP_015572387.12e-30agamous-like MADS-box protein AGL11 isoform X1
SwissprotQ407046e-31MADS3_ORYSJ; MADS-box transcription factor 3
TrEMBLA0A287EXI12e-30A0A287EXI1_HORVV; Uncharacterized protein
TrEMBLA0A453K6C76e-30A0A453K6C7_AEGTS; Uncharacterized protein
STRINGTraes_5BS_A19FD8E34.15e-33(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.23e-32MIKC_MADS family protein
Publications ? help Back to Top
  1. Kyozuka J,Shimamoto K
    Ectopic expression of OsMADS3, a rice ortholog of AGAMOUS, caused a homeotic transformation of lodicules to stamens in transgenic rice plants.
    Plant Cell Physiol., 2002. 43(1): p. 130-5
    [PMID:11828031]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]