PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BS_A782F7510.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family YABBY
Protein Properties Length: 174aa    MW: 19236.6 Da    PI: 10.2972
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BS_A782F7510.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY174.76e-54114731170
                  YABBY  31 lfkvvtvrCGhCtsllsvnlakasql.laaeshldeslkee...lleelkveeenlksnve..keesastsvsseklsenedeevprv 112
                            ++++vtvrCGhCt+llsv+l+ +++  ++   +++es   +        ++++++++s +   +++s+s++ ++ ++  ++++++ + 
  Traes_5BS_A782F7510.2   1 MLNIVTVRCGHCTNLLSVSLRGQMHSpVPPAAQVQESSLSKpngSNGFIRDHGSAYNSPEFgsSSSSSSSKFRMPTMMFSSQNDLLQE 88 
                            579*****************98775425555666776655545533334555555555443003334444455555555555555554 PP

                  YABBY 113 pp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                            +    rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl
  Traes_5BS_A782F7510.2  89 QTlHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 147
                            44479****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.6E-541147IPR006780YABBY protein
SuperFamilySSF470951.96E-892141IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.2E-594141IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MLNIVTVRCG HCTNLLSVSL RGQMHSPVPP AAQVQESSLS KPNGSNGFIR DHGSAYNSPE  60
FGSSSSSSSS KFRMPTMMFS SQNDLLQEQT LHARPPEKRQ RVPSAYNRFI KEEIRRIKAN  120
NPDISHREAF STAAKNWAHY PNIHFGLNPE RDGGKRLAVD DAAPAAKKIQ GFCS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0091060.0BT009106.1 Triticum aestivum clone wkm2n.pk008.p10:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201583.11e-118protein YABBY 6-like
SwissprotQ2QM171e-70YAB6_ORYSJ; Protein YABBY 6
TrEMBLA0A3B6LFL21e-127A0A3B6LFL2_WHEAT; Uncharacterized protein
STRINGTraes_5BS_A782F7510.21e-128(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.23e-46YABBY family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]