PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5BS_E0345D5DF.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

WRKY

Protein Properties

Length: 355aa MW: 38130.4 Da PI: 10.8004

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BS_E0345D5DF.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.9	5.8e-30	289	346	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+ ++p ++++tYegeH h+ Traes_5BS_E0345D5DF.2 289 DEYSWRKYGQKPIKGSPHPRGYYKCSTVrGCPARKHVERCVDEPVMLIVTYEGEHSHN 346 9**********************9888**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	4.8E-18	240	285	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	2.7E-32	275	347	IPR003657	WRKY domain
PROSITE profile	PS50811	29.402	282	348	IPR003657	WRKY domain
SuperFamily	SSF118290	2.62E-26	285	347	IPR003657	WRKY domain
SMART	SM00774	2.5E-35	287	347	IPR003657	WRKY domain
Pfam	PF03106	8.3E-26	289	345	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MEEVEAANSA AVESCHKLLA LLSQQQDPAL LRSIASETGE ACAKFRKVVS LLSNGGGGRG 60 GHARGRFSRR RKPVGFLSQK GFLESSSNTP LGMLMSGSAP TPSPSAASAA QLRPQVGAPP 120 QPRSLDLVSS SSKSAHQFGP PKMVQPLSVQ FQFGATAHRY PFQQQQQNLQ AQMFKRSNSG 180 ISLKFDSPSG GAGTISSPRS FMSSLSMDGS VASLDGKPPM RLLGGPAASD TLNVRQCAPK 240 RRCTGRGEDG SGKCTTGGKC HCSKRRKLRI KRSIKVPAIS NKISDIPPDE YSWRKYGQKP 300 IKGSPHPRGY YKCSTVRGCP ARKHVERCVD EPVMLIVTYE GEHSHNRLPT QSAQT

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MEEVEAANSA AVESCHKLLA LLSQQQDPAL LRSIASETGE ACAKFRKVVS LLSNGGGGRG  60
GHARGRFSRR RKPVGFLSQK GFLESSSNTP LGMLMSGSAP TPSPSAASAA QLRPQVGAPP  120
QPRSLDLVSS SSKSAHQFGP PKMVQPLSVQ FQFGATAHRY PFQQQQQNLQ AQMFKRSNSG  180
ISLKFDSPSG GAGTISSPRS FMSSLSMDGS VASLDGKPPM RLLGGPAASD TLNVRQCAPK  240
RRCTGRGEDG SGKCTTGGKC HCSKRRKLRI KRSIKVPAIS NKISDIPPDE YSWRKYGQKP  300
IKGSPHPRGY YKCSTVRGCP ARKHVERCVD EPVMLIVTYE GEHSHNRLPT QSAQT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-19	275	349	2	75	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK374747	0.0	AK374747.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3075F07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020163784.1	0.0	protein WRKY1-like
Swissprot	Q93WU6	8e-93	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	A0A3B6LGM9	0.0	A0A3B6LGM9_WHEAT; Uncharacterized protein
STRING	Traes_5BS_E0345D5DF.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2859	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28650.1	7e-62	WRKY DNA-binding protein 74

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]