PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BS_FED4AE2C5.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CPP
Protein Properties Length: 764aa    MW: 82274.3 Da    PI: 7.6824
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BS_FED4AE2C5.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.39.4e-16455494241
                    TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                            ++k+C+CkkskClk+YCeCf+ag++Cse C+C++C Nk +
  Traes_5BS_FED4AE2C5.2 455 SCKRCSCKKSKCLKLYCECFHAGVFCSEPCSCQGCLNKPS 494
                            689**********************************976 PP
2TCR50.63.9e-16540578139
                    TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                            ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Traes_5BS_FED4AE2C5.2 540 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNA 578
                            589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.1E-15454495IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.71455580IPR005172CRC domain
PfamPF036388.2E-12457492IPR005172CRC domain
SMARTSM011144.4E-17540581IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-11542578IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
IGTFRIRLPS AFVDFDSPVF NFINNLSPIP PPKPQDSSHN VHLFKSSDLA PVSSIFASPH  60
VNPPKESKLL IRDDSVQLSQ DSNSPNSVRT RLGSAIRLIK CKNIVSENCS FTCHLNQGPI  120
DSSANRSNST SKLPQTIQFV GDSSECGKNQ SADGKKDLAR DQESIELEGV LLDHTGPDKI  180
DSSQPGRIVH ENQQCEQQKD GFTAYDGDYL ITHESSMDML RLAPPCEADT QLVNETLNAD  240
NVFSGNSLLT DGPSGSYINN AAHDPNLYWD GTVEGPTTDY TPQLLSGACQ SQSVSNDQIC  300
NAVEEPSDHI PIDQSALSQN MRGMRRRCLF NEKAGAVNKA AKKTSDRHSA NTTTPRCKTN  360
SGDKPVRTPP CALPGIGLHL NALAPISTDK IVPQAAQSTI NQASNFPCAV SSSTAEPNIV  420
NEDSSQAIVV ANADESGQGS PKKKRHKFDD GDGTSCKRCS CKKSKCLKLY CECFHAGVFC  480
SEPCSCQGCL NKPSNMEIVL STREQIESRN PLAFAPKVIR TSEPGQELGE YPNKTPASAR  540
HKRGCNCKKS SCLKKYCECY QGGVGCSISC RCEGCKNAFG RREGELLLSI EEAKQGNEEN  600
SACVKEEKKE DDNNQLVICP AANPAPAENV LTTPSAMDVR PLASRPPSSS KRPRSTTKAL  660
GHPSRLCNSQ APLKTDTLLS PFENYAEIMF GVGTSDSLKG GLSPQTSVKV VSPNKKRVSP  720
PRIGTGLSPI CKSGRKLILK SIPSFPSLCG DVNNVDTKTT SPAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-1545957714120Protein lin-54 homolog
5fd3_B2e-1545957714120Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3544340.0AK354434.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1007E24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189110.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A3B6LGS90.0A0A3B6LGS9_WHEAT; Uncharacterized protein
TrEMBLA0A446TVX20.0A0A446TVX2_TRITD; Uncharacterized protein
STRINGTraes_5BS_FED4AE2C5.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127462630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.15e-75TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]