PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_0C5F4342D.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 177aa    MW: 19806.9 Da    PI: 11.9561
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_0C5F4342D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002162175114
                            EEETTTTEEESSHH CS
                zf-C2H2   1 ykCpdCgksFsrks 14 
                            +kC+ CgksFs+  
  Traes_5DL_0C5F4342D.1 162 FKCSVCGKSFSSYQ 175
                            89********9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.871162177IPR007087Zinc finger, C2H2
PfamPF139123.6E-6162177IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MLHLRRNFPR RRPPPRPHRF ITLSLHHSLT PHPARARRTP KQPHSPTLSH RTRKKKKRSS  60
LSLLCLASFV TAMSSSAMEA LHALIPEQHQ RDVEAAAALS GATSGEESGH VLQGWAKRKR  120
SRRQRSEEEN LALCLLMLSR GGKQRVQAPQ PEAFAAPVPA EFKCSVCGKS FSSYQAL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1916RRRPPPRP
25257RKKKKR
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankWHTWZF1A0.0D16415.1 Triticum aestivum gene for zinc-finger protein WZF1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167815.16e-68zinc finger protein 1
SwissprotQ424302e-51ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A3B6MX141e-122A0A3B6MX14_WHEAT; Uncharacterized protein
STRINGTraes_5DL_0C5F4342D.11e-124(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]