PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5DL_13706ACAF.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 221aa MW: 25204.4 Da PI: 10.255

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5DL_13706ACAF.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.4	1.4e-06	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F r nL+ H r H Traes_5DL_13706ACAF.2 66 FVCEVCGKGFQREQNLQLHRRGH 88 89*******************88 PP
2	zf-C2H2	11.7	0.00079	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C k++ +s+ k H +t+ Traes_5DL_13706ACAF.2 142 WKCDKCAKRYAVQSDWKAHSKTC 164 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.61E-8	65	88	No hit	No description
SMART	SM00355	0.0027	66	88	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.1E-6	66	88	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.759	66	88	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	68	88	IPR007087	Zinc finger, C2H2
SMART	SM00355	310	107	137	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	4.1E-5	130	163	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.61E-8	137	162	No hit	No description
SMART	SM00355	210	142	162	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MAAASSAPFF GLSDAQMQPL MAAQQPPAPA AAAPAPKKKR NQPGNPNPDA EVIALSPRSL 60 MATNRFVCEV CGKGFQREQN LQLHRRGHNL PWKLKQKNPK ETRRRVYLCP EPTCVHHDPA 120 RALGDLTGIK KHYCRKHGEK KWKCDKCAKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRY 180 IYHMHAIDIP IRPRSMFQFI FGSYMRVLIL FAVGFWICMS E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-22	138	188	3	56	Zinc finger protein JACKDAW
5b3h_F	5e-22	138	188	3	56	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK354562	0.0	AK354562.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1008H21.
GenBank	AK357401	0.0	AK357401.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1052H09.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020188927.1	1e-134	protein indeterminate-domain 5, chloroplastic-like
Refseq	XP_020188928.1	1e-134	protein indeterminate-domain 5, chloroplastic-like
Refseq	XP_020188929.1	1e-134	protein indeterminate-domain 5, chloroplastic-like
Refseq	XP_020188931.1	1e-134	protein indeterminate-domain 5, chloroplastic-like
Swissprot	Q8RWX7	1e-101	IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
TrEMBL	A0A3B6MWR0	1e-132	A0A3B6MWR0_WHEAT; Uncharacterized protein
TrEMBL	A0A3B6MY25	1e-133	A0A3B6MY25_WHEAT; Uncharacterized protein
TrEMBL	A0A453LL54	1e-132	A0A453LL54_AEGTS; Uncharacterized protein
STRING	Traes_5DL_13706ACAF.2	1e-167	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14580.2	3e-98	C2H2-like zinc finger protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Bustillo-Avendaño E, et al. Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis. Plant Physiol., 2018. 176(2): p. 1709-1727 [PMID:29233938]