PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_156E53683.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 255aa    MW: 27729.5 Da    PI: 8.824
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_156E53683.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.72.7e-333589155
                G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                           kprlrWt +LHerFv+av+qLGG+ekAtPktil++m+vkgLtl h+kSHLQkYR+
  Traes_5DL_156E53683.1 35 KPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSHLQKYRM 89
                           79****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-313290IPR009057Homeodomain-like
PROSITE profilePS5129411.4223292IPR017930Myb domain
SuperFamilySSF466893.23E-163590IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-243590IPR006447Myb domain, plants
PfamPF002491.6E-83788IPR001005SANT/Myb domain
PfamPF143796.9E-20130175IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0010628Biological Processpositive regulation of gene expression
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MFPPGLIHHR TDGPGPGEVP RSGGAPSLVL TADPKPRLRW TADLHERFVD AVAQLGGPEK  60
ATPKTILRTM GVKGLTLFHL KSHLQKYRMG KQTGKETPEQ SKDGSYLLDA QGGMSLSPRV  120
STQDAKESQE VKEALRAQME MQRSLHEQVE VQKHVDIRMD AYTTYINTLL EKACKIVSEQ  180
FASSGFSVSD QSLPELSSGG IMCGTATDAL SSSVFHQLSV SSINMHSPGG KPSPSGMEGQ  240
LLLQRSPEFK RKSSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-183591157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-183591157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-183591157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-183591157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00378DAPTransfer from AT3G24120Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3636650.0AK363665.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2017P09.
GenBankAK3673540.0AK367354.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2055J10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195363.10.0protein PHR1-LIKE 2-like isoform X2
RefseqXP_020195364.10.0protein PHR1-LIKE 2-like isoform X2
RefseqXP_020195365.10.0protein PHR1-LIKE 2-like isoform X2
RefseqXP_020195366.10.0protein PHR1-LIKE 2-like isoform X2
RefseqXP_020195367.10.0protein PHR1-LIKE 2-like isoform X2
SwissprotQ94A575e-66PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA0A3B6MQX50.0A0A3B6MQX5_WHEAT; Uncharacterized protein
TrEMBLA0A453KKZ20.0A0A453KKZ2_AEGTS; Uncharacterized protein
STRINGTraes_5DL_156E53683.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34273873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.14e-68G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]