PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_2553A6C33.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 115aa    MW: 13095.3 Da    PI: 8.629
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_2553A6C33.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.2e-301371259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                           +D y+WrKYGqK++kgs++pr+YYrC+s  +Cp++k+ver++ d  ++++tYe++Hnh 
  Traes_5DL_2553A6C33.1 13 SDSYSWRKYGQKPIKGSPHPRGYYRCSSIkDCPARKHVERCRGDAGMLIVTYENDHNHA 71
                           69************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-33673IPR003657WRKY domain
PROSITE profilePS5081130.274773IPR003657WRKY domain
SuperFamilySSF1182902.62E-271073IPR003657WRKY domain
SMARTSM007741.9E-351272IPR003657WRKY domain
PfamPF031069.4E-261470IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MPAVSDKVAD IPSDSYSWRK YGQKPIKGSP HPRGYYRCSS IKDCPARKHV ERCRGDAGML  60
IVTYENDHNH AQPLDLATLT ANSEXXXXXX XXXXXXXXXX XXWNMPFSLT KSECK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21573774WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6654371e-124EU665437.1 Triticum aestivum WRKY8 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156284.11e-55probable WRKY transcription factor 15
SwissprotQ9STX03e-38WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A3B6MZL33e-60A0A3B6MZL3_WHEAT; Uncharacterized protein
STRINGTraes_5DL_2553A6C33.14e-65(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127053036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-40WRKY DNA-binding protein 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]