PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_26F3B188A.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 363aa    MW: 39545.9 Da    PI: 4.8875
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_26F3B188A.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.74e-20101150255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+G+r+++ +g+W+AeIrdps+     r++lg+++taeeAa+a++a ++k++g
  Traes_5DL_26F3B188A.2 101 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYDTAEEAARAYDAEARKIRG 150
                            69*******.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.77E-22101159IPR016177DNA-binding domain
SMARTSM003805.5E-39101164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-32101159IPR001471AP2/ERF domain
PROSITE profilePS5103224.184101158IPR001471AP2/ERF domain
CDDcd000183.06E-32101160No hitNo description
PfamPF008472.1E-12102150IPR001471AP2/ERF domain
PRINTSPR003671.1E-11102113IPR001471AP2/ERF domain
PRINTSPR003671.1E-11124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
AAAAKKKQQQ RSVTADSLWP GLRKKAAEEE DFEADFRDFE RDSSDDDAVV EEVPPPPASA  60
GXXXXXAKDA PACLASPLRR DDAVQHDGPA AKQVKRVRKN QYRGIRQRPW GKWAAEIRDP  120
SKGVRVWLGT YDTAEEAARA YDAEARKIRG KKAKVNFPED APTVQKSTLK PTAAKSAKLA  180
PPPKACEDEP FNHLSRGDND LFAMFAFNDK KVPAKPAESV DSLLPVKPLV PTETFGMNML  240
SDQSSNSFGS TDFGWDDEVM TPDYTSVFVP NAAAMPAYGE PAYLQGGAPK RMRNNFGVAV  300
LPQGNVAQDI PAFDHEMKYS LPYVESSSDG SMDSLLLNGA MQDGASSGDL WSLDELFMAA  360
GGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-20101158260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-20101158563ATERF1
3gcc_A4e-20101158563ATERF1
5wx9_A1e-191011601474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6811910.0JN681191.1 Triticum aestivum ethylene responsive transcription factor 5a (ERF5a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194933.10.0ethylene-responsive transcription factor 1-like
TrEMBLA0A3B6MSC10.0A0A3B6MSC1_WHEAT; Ethylene response factor
TrEMBLA0A453KVA40.0A0A453KVA4_AEGTS; Uncharacterized protein
STRINGTraes_5DL_26F3B188A.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112003142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.31e-27related to AP2 12
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]