PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5DL_32D78D06A.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

WRKY

Protein Properties

Length: 105aa MW: 11810.2 Da PI: 9.5671

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5DL_32D78D06A.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.9	1.4e-30	46	105	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +C+vkkkv+rsaed +vve tYegeHnh+ Traes_5DL_32D78D06A.1 46 VKDGYQWRKYGQKVTRDNPSPRAYFRCAFApSCRVKKKVQRSAEDSSVVEATYEGEHNHP 105 58*************************99**************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	25.453	41	105	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.4E-28	41	105	IPR003657	WRKY domain
SuperFamily	SSF118290	2.09E-25	42	105	IPR003657	WRKY domain
SMART	SM00774	7.9E-31	46	105	IPR003657	WRKY domain
Pfam	PF03106	2.8E-25	47	105	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 105 aa Download sequence Send to blast
ISNRNVGTGE AEHVDVDSPL SNGTCRRIKV KKVCTRIDPS DTSLVVKDGY QWRKYGQKVT 60 RDNPSPRAYF RCAFAPSCRV KKKVQRSAED SSVVEATYEG EHNHP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-19	45	104	16	74	Probable WRKY transcription factor 4
2lex_A	3e-19	45	104	16	74	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250\|UniProtKB:Q6EPZ2, ECO:0000250\|UniProtKB:Q6QHD1}.
UniProt	Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (PubMed:21961049). {ECO:0000250\|UniProtKB:Q6QHD1, ECO:0000269\|PubMed:21961049}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (By similarity). {ECO:0000250\|UniProtKB:Q6EPZ2, ECO:0000269\|PubMed:16528562}.
UniProt	INDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (PubMed:23462973). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (PubMed:17601827). {ECO:0000269\|PubMed:16528562, ECO:0000269\|PubMed:17601827, ECO:0000269\|PubMed:23462973}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX424311	1e-152	JX424311.1 Triticum monococcum WRKY transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020147443.1	7e-72	WRKY transcription factor WRKY76-like
Swissprot	Q6EPZ2	2e-52	WRK76_ORYSJ; WRKY transcription factor WRKY76
Swissprot	Q6IEK5	1e-52	WRK76_ORYSI; WRKY transcription factor WRKY76
TrEMBL	A0A453KX94	2e-71	A0A453KX94_AEGTS; Uncharacterized protein
TrEMBL	N1QZ98	6e-71	N1QZ98_AEGTA; Putative WRKY transcription factor 40
STRING	EMT16727	9e-72	(Aegilops tauschii)
STRING	Traes_5DL_32D78D06A.1	6e-73	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6660	35	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80840.1	2e-41	WRKY DNA-binding protein 40

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Peng Y,Bartley LE,Canlas P,Ronald PC OsWRKY IIa Transcription Factors Modulate Rice Innate Immunity. Rice (N Y), 2010. 3(1): p. 36-42 [PMID:21961049] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Chujo T, et al. OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus. Plant Mol. Biol., 2013. 82(1-2): p. 23-37 [PMID:23462973] Yokotani N, et al. WRKY76 is a rice transcriptional repressor playing opposite roles in blast disease resistance and cold stress tolerance. J. Exp. Bot., 2013. 64(16): p. 5085-97 [PMID:24043853] Liu J, et al. Alternative Splicing of Rice WRKY62 and WRKY76 Transcription Factor Genes in Pathogen Defense. Plant Physiol., 2016. 171(2): p. 1427-42 [PMID:27208272]