PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_36AE1EF2B.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 223aa    MW: 24525.6 Da    PI: 9.9929
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_36AE1EF2B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.54e-34161371128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                            lppGfrFhPtd elv +yL++ + +++l++  vi+ v+   + +PwdLp +  +e ++ yfFs+r+ +   g r++ +++sgyWkatg
  Traes_5DL_36AE1EF2B.1  16 LPPGFRFHPTDVELVLQYLRRMALDRPLPA-AVIPVVHAAAMpDPWDLPGA--SEGESAYFFSPRQGR---GGRRR-KAASGYWKATG 96 
                            79***************************9.899999666555******43..466889*****9875...45554.4678******* PP

                    NAM  88 kdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            k+k+v+++    k+ lvg+k++L+f++g++    +tdWvmheyrl
  Traes_5DL_36AE1EF2B.1  97 KEKPVFVQlpvgKQLLVGVKTVLTFHRGKS----RTDWVMHEYRL 137
                            *******999977778**********6544....79*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.02E-4210164IPR003441NAC domain
PROSITE profilePS5100541.23816164IPR003441NAC domain
PfamPF023654.5E-2517137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MEKMRAAGEA PPTQQLPPGF RFHPTDVELV LQYLRRMALD RPLPAAVIPV VHAAAMPDPW  60
DLPGASEGES AYFFSPRQGR GGRRRKAASG YWKATGKEKP VFVQLPVGKQ LLVGVKTVLT  120
FHRGKSRTDW VMHEYRLAGA ADQNKRANDG SQSSEWVVCR VSLKSRARRT AAGGETTGDQ  180
QQEQPSPSPS STSSCVTDHT CHAPDQEEVS SSTTSHCQQH PRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-3041653169Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3689130.0AK368913.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2082C12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168455.11e-165NAC domain-containing protein 41-like
TrEMBLA0A3B6MVZ91e-164A0A3B6MVZ9_WHEAT; Uncharacterized protein
TrEMBLA0A453L9001e-164A0A453L900_AEGTS; Uncharacterized protein
STRINGTraes_5DL_36AE1EF2B.11e-165(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128052735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.22e-32NAC domain containing protein 47
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]