PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5DL_3BA7EE3F0.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 51aa MW: 6226.38 Da PI: 10.2343

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5DL_3BA7EE3F0.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.5	1.2e-08	17	50	10	48
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAv 48 +rRR++iN+++ L++l+P+ +K++ +++Le+Av Traes_5DL_3BA7EE3F0.1 17 QRRREKINDRLRALQKLVPNG-----TKVDLSTMLEEAV 50 8******************97.....7999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.156	7	51	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.97E-8	17	50	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-5	17	50	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-8	17	50	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.23E-6	17	50	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 51 aa Download sequence Send to blast
WVYVYKDWFR VLFCPMQRRR EKINDRLRAL QKLVPNGTKV DLSTMLEEAV L

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Traes_5DL_3BA7EE3F0.1	2e-30	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP56240	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14760.3	2e-15	bHLH family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]