PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5DL_3FC31F9ED.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB_related

Protein Properties

Length: 86aa MW: 9714.79 Da PI: 9.8201

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5DL_3FC31F9ED.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.9	1.3e-09	13	57	3	44
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 W++ E +l+ da + +G g +W +++r mg ++t+ +++ ++ Traes_5DL_3FC31F9ED.1 13 EWSKKENKLFEDALAYYGEGtpdRWLKVSRAMGGTKTADEVRRHY 57 5*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.795	6	61	IPR017877	Myb-like domain
SuperFamily	SSF46689	1.27E-11	8	63	IPR009057	Homeodomain-like
SMART	SM00717	7.2E-7	10	63	IPR001005	SANT/Myb domain
CDD	cd00167	3.32E-5	13	57	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-4	13	64	IPR009057	Homeodomain-like
Pfam	PF00249	1.8E-7	13	57	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 86 aa Download sequence Send to blast
MSSGSRSSSR GAEWSKKENK LFEDALAYYG EGTPDRWLKV SRAMGGTKTA DEVRRHYEIL 60 DSDIKLIDSG RVPFPKYNTQ GRGAWN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	4e-24	7	81	2	77	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269\|PubMed:15790677}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269\|PubMed:15790677, ECO:0000269\|PubMed:16236768}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK373937	1e-101	AK373937.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3048G15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020162907.1	1e-48	transcription factor RADIALIS-like
Refseq	XP_020171411.1	1e-48	transcription factor RADIALIS-like
Swissprot	Q58FS3	6e-24	RAD_ANTMA; Transcription factor RADIALIS
TrEMBL	A0A3B6MTV6	1e-56	A0A3B6MTV6_WHEAT; Uncharacterized protein
STRING	Traes_5DL_3FC31F9ED.1	2e-57	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1067	33	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39250.1	7e-24	RAD-like 1

Publications ? help Back to Top
Corley SB,Carpenter R,Copsey L,Coen E Floral asymmetry involves an interplay between TCP and MYB transcription factors in Antirrhinum. Proc. Natl. Acad. Sci. U.S.A., 2005. 102(14): p. 5068-73 [PMID:15790677] Costa MM,Fox S,Hanna AI,Baxter C,Coen E Evolution of regulatory interactions controlling floral asymmetry. Development, 2005. 132(22): p. 5093-101 [PMID:16236768] Stevenson CE, et al. Crystallization and preliminary X-ray analysis of the RAD protein from Antirrhinum majus. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 2005. 61(Pt 10): p. 885-8 [PMID:16511186] Stevenson CE, et al. Crystal structure of the MYB domain of the RAD transcription factor from Antirrhinum majus. Proteins, 2006. 65(4): p. 1041-5 [PMID:17044043] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]