PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_41E3B1B23.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 198aa    MW: 21668.5 Da    PI: 6.9226
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_41E3B1B23.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-1951101256
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                            +y+G+r+++ +g+W+AeIrdp+    +  r++lg++ tae Aa+a+++a+++++g+
  Traes_5DL_41E3B1B23.1  51 QYRGIRQRP-WGKWAAEIRDPV----KgVRVWLGTYPTAEAAARAYDRAARRIRGA 101
                            6********.**********75....44*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.62E-2251109IPR016177DNA-binding domain
SMARTSM003809.7E-3651114IPR001471AP2/ERF domain
PROSITE profilePS5103224.48751108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-3251109IPR001471AP2/ERF domain
CDDcd000187.23E-1751109No hitNo description
PRINTSPR003673.6E-115263IPR001471AP2/ERF domain
PfamPF008479.9E-1352100IPR001471AP2/ERF domain
PRINTSPR003673.6E-117490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MCGGAIIYDY IPAHRRRVST ADFWPDANDH SDAHSTAPDK APRAKRGRTN QYRGIRQRPW  60
GKWAAEIRDP VKGVRVWLGT YPTAEAAARA YDRAARRIRG AKAKVNFPNE ILVGAPAHEA  120
PCTMAAVLPS PKKEEEPAAC SCEEVKALSE ELMAYESYMS FLGVPYMEGG AAAAPAAEEA  180
PAELWSFEDS YYPGPLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2251114569ATERF1
3gcc_A1e-2251114569ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3674170.0AK367417.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2056M04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163333.11e-143ethylene-responsive transcription factor ERF071-like
TrEMBLA0A3B6MVF21e-142A0A3B6MVF2_WHEAT; Ethylene response factor
TrEMBLA0A453LDL51e-142A0A453LDL5_AEGTS; Uncharacterized protein
STRINGTraes_5DL_41E3B1B23.11e-143(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115472540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.11e-29ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]