PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5DL_43FC1B296.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 253aa MW: 27829.9 Da PI: 10.0896

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5DL_43FC1B296.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	128.2	6.3e-40	18	156	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 +pGfrF Pt++el+ +yL+++++g++ ++++vi+ vd+y+++P++L++ + ++ ++w+fF++r++++ +g r+ r+t sgyWk Traes_5DL_43FC1B296.2 18 TPGFRFYPTEDELLGFYLRHRLAGTTrPHVDRVIPVVDVYSHHPSHLRSmageASVQDAEQWFFFCPRAERELRGGRPARTTPSGYWK 105 69*******************9995666678**********8434532223566************************ PP NAM 85 atgkdkevlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128 atg+ v+s+ +++++g+k+t+vfy+grap+g kt+W m+ey++ Traes_5DL_43FC1B296.2 106 ATGSPSCVFSSsssaaagNSKVIGVKRTMVFYQGRAPTGAKTTWKMNEYKA 156 *****9988888877788*************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-43	13	186	IPR003441	NAC domain
PROSITE profile	PS51005	44.407	17	187	IPR003441	NAC domain
Pfam	PF02365	2.8E-22	19	155	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MMTTTSSGGA GGDLLGSTPG FRFYPTEDEL LGFYLRHRLA GTTRPHVDRV IPVVDVYSHH 60 PSHLRSMAGE ASVQDAEQWF FFCPRAEREL RGGRPARTTP SGYWKATGSP SCVFSSSSSA 120 AAGNSKVIGV KRTMVFYQGR APTGAKTTWK MNEYKAVAAD DDTTTGHQTT APLRLRNEFS 180 VCRLYISTGT LRSFDRRPLN TSGNGQAXXX XXXXXXXRVS DKPTTIKAGA HTVSCRNLEQ 240 FCYPKKTVLL YVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-27	15	185	13	166	Stress-induced transcription factor NAC1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020185458.1	1e-153	NAC domain-containing protein 90-like isoform X1
Swissprot	Q9FMR3	2e-68	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A453KAA1	1e-152	A0A453KAA1_AEGTS; Uncharacterized protein
STRING	Traes_5DL_43FC1B296.2	1e-180	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	7e-64	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]