PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_46A3B0DAB1.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TCP
Protein Properties Length: 275aa    MW: 30249.7 Da    PI: 6.3521
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_46A3B0DAB1.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP108.78.5e-34102184383
                     TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssas 83 
                              ++drhski T++g RdRR+Rls+++a+ fF+Lqd+LGfdk+skt++WLl+q+kpai+ l + ss  + +   e+++ss s+ 
  Traes_5DL_46A3B0DAB1.1 102 FRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDQLGFDKASKTVDWLLTQSKPAIDRLSSESSRLNAARagEDGMSSLSSV 184
                             589**********************************************************9955444222333333332222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-33103184IPR005333Transcription factor, TCP
PROSITE profilePS5136934.334103161IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MLPYHPNPHG FWISREPPAQ VPNPASGFAV APPAHLDHQI QHYDHFFPGH GNQFNSETLE  60
AVLMRPRPPA PPPAEMPPAN EARTGAVQAA GTGHARARKR SFRTDRHSKI RTAQGVRDRR  120
MRLSLDVARD FFALQDQLGF DKASKTVDWL LTQSKPAIDR LSSESSRLNA ARAGEDGMSS  180
LSSVEREGRR LKETELAAGS GKGAADVEKA MRARGGGTSV LMEHRREMNG GFMSASMTGG  240
EYYYDLGEMM CINAGECDDD GEYDEDGDFL DGMQY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0050936e-78AP005093.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1294_G06.
GenBankAP0149656e-78AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankEU7024076e-78EU702407.1 Oryza sativa Japonica Group putative TCP transcription factor (DP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173868.10.0transcription factor TCP18-like
TrEMBLA0A3B6MSY30.0A0A3B6MSY3_WHEAT; Uncharacterized protein
STRINGTraes_5DL_46A3B0DAB1.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.12e-26TCP family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]