PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_4E890ABF3.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 167aa    MW: 18144.5 Da    PI: 8.5279
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_4E890ABF3.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000695981123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C+ Cg+ F +   L  H  +H
  Traes_5DL_4E890ABF3.1 59 FVCKTCGRAFETFQALGGHRTSH 81
                           89*********999998888777 PP
2zf-C2H211.70.00082110132123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            + C++C+  F +   L  H+r+H
  Traes_5DL_4E890ABF3.1 110 HDCHICTLGFETGQALGGHMRRH 132
                            56********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.54E-55585No hitNo description
SMARTSM003550.425981IPR015880Zinc finger, C2H2-like
PfamPF139126.3E-105983IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.4925986IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SuperFamilySSF576674.78E-5107136No hitNo description
SMARTSM003551.1110132IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.683110137IPR007087Zinc finger, C2H2
PfamPF139127.8E-9110135IPR007087Zinc finger, C2H2
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MGAGMKHARE EEPIVSLALS LSTDSSASTT TSDSSTGAPA AKKRVRRGRV VVTSGQGEFV  60
CKTCGRAFET FQALGGHRTS HLRGRHGLEL GVCVARAIGE RQRHDDKQQH DCHICTLGFE  120
TGQALGGHMR RHREEMALDR WVALSDQEAG HQAAAAYRLP VLLELFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198421.11e-119zinc finger protein ZAT8-like
TrEMBLA0A453M9H01e-117A0A453M9H0_AEGTS; Uncharacterized protein
TrEMBLM8D6F11e-117M8D6F1_AEGTA; Uncharacterized protein
STRINGEMT320011e-118(Aegilops tauschii)
STRINGTraes_5DL_4E890ABF3.11e-118(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.12e-19C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]