PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_50E35B4F3.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 170aa    MW: 18230.8 Da    PI: 10.2533
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_50E35B4F3.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000865779123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C+ Cg+ F +   L  H  +H
  Traes_5DL_50E35B4F3.1 57 FVCKTCGRAFASFQALGGHRTSH 79
                           89*********999998888777 PP
2zf-C2H214.40.00011107129123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C++Cg  F+    L  H+r+H
  Traes_5DL_50E35B4F3.1 107 HECHICGLGFKMGQALGGHMRRH 129
                            79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.49E-957129No hitNo description
SMARTSM003550.345779IPR015880Zinc finger, C2H2-like
PfamPF139128.2E-105781IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.6585784IPR007087Zinc finger, C2H2
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.8E-4104131IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.27107129IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.536107134IPR007087Zinc finger, C2H2
PfamPF139122.5E-10107132IPR007087Zinc finger, C2H2
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MGAGMKRARE EEPTVPLALS LSTDSASSAV TSADSGAAGP AKRRRGVVVA TSGEGEFVCK  60
TCGRAFASFQ ALGGHRTSHL RGRHGLELGV GVARAIKERK KRDEKQHECH ICGLGFKMGQ  120
ALGGHMRRHR EEIALRSADD RWVALLPDQK VEGQQAAADR PPPVLLELFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3556322e-82AK355632.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1023K12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198429.11e-119zinc finger protein ZAT12-like
TrEMBLA0A3B6N2781e-118A0A3B6N278_WHEAT; Uncharacterized protein
STRINGTraes_5DL_50E35B4F3.11e-119(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.11e-20C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]