PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_6003530B1.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 135aa    MW: 14240.2 Da    PI: 9.2121
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_6003530B1.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.39.1e-142441055
                    AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           + +g+++AeIrd + ng  +r++lg+f+t+  Aa a+++a+ + +g
  Traes_5DL_6003530B1.1  2 P-WGKYAAEIRDSTRNG--ARVWLGTFDTPHAAALAYDQAAFSVRG 44
                           5.**********44465..**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.0E-24152IPR001471AP2/ERF domain
PROSITE profilePS5103219.164152IPR001471AP2/ERF domain
CDDcd000189.99E-14153No hitNo description
SuperFamilySSF541713.07E-18154IPR016177DNA-binding domain
SMARTSM003801.3E-26158IPR001471AP2/ERF domain
PfamPF008471.3E-8144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
RPWGKYAAEI RDSTRNGARV WLGTFDTPHA AALAYDQAAF SVRGPAAVLN FPVKLVQESL  60
RALGIGGAAA AGDSPALALK RRHCIRKKNP KNKMRTGTAT AAAGTDAASS LSACVLELED  120
LGADYLEELL TMSDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-231522172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178598.13e-93ethylene-responsive transcription factor ERF094-like
SwissprotA0A3Q7I5Y97e-39ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A3B6MWI37e-92A0A3B6MWI3_WHEAT; Uncharacterized protein
TrEMBLA0A453LCM17e-92A0A453LCM1_AEGTS; Uncharacterized protein
STRINGTraes_5DL_6003530B1.11e-93(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.19e-32ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]