PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5DL_8D5DCE2BA.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 190aa MW: 21243.7 Da PI: 7.8021

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5DL_8D5DCE2BA.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.1	8.6e-10	69	116	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka++L + ++Y++ L+ Traes_5DL_8D5DCE2BA.2 69 SHSLAERARREKITERMKILQDLVPGC----NKVIGKASVLDEIINYVQALE 116 8***********************9....677************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.41E-17	63	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.12E-9	63	120	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.4E-18	65	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	65	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-7	69	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-9	71	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
PPIHWNLNVQ TDAEAKRFKA NKSSDENGSF RKDAEADSRN ASKAVDQNPP PPKQDFIHVR 60 ARRGQATDSH SLAERARREK ITERMKILQD LVPGCNKVIG KASVLDEIIN YVQALERQIE 120 FLSMKLEAVN AHAHAHNGVE TFPTKDFAAP TYNTAPGLTF DPQTPREYAQ GSPAAEWLHM 180 QIGGTYERVT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may regulate jasmonate-regulated genes. {ECO:0000250\|UniProtKB:Q69WS3}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK369263	1e-133	AK369263.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2087O19.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020152106.1	1e-132	transcription factor bHLH79-like
Swissprot	Q84T08	1e-104	BH089_ORYSJ; Transcription factor BHLH089
TrEMBL	T1MAZ8	1e-133	T1MAZ8_TRIUA; Uncharacterized protein
STRING	Traes_5DL_8D5DCE2BA.2	1e-141	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3065	35	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.1	2e-63	BIG PETAL P

Publications ? help Back to Top
Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]