PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_90F570468.7
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 170aa    MW: 18244.8 Da    PI: 9.5734
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_90F570468.7genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000445779123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C+ Cg+ F +   L  H  +H
  Traes_5DL_90F570468.7 57 FVCKTCGRAFATFQALGGHRTSH 79
                           89**********99998888777 PP
2zf-C2H213.10.00028107129123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C++Cg  F     L  H+r+H
  Traes_5DL_90F570468.7 107 HQCHICGLGFEMGQALGGHMRRH 129
                            79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.7E-45280IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.5E-95781IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.6165784IPR007087Zinc finger, C2H2
SuperFamilySSF576672.16E-857129No hitNo description
SMARTSM003550.385779IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.7E-4104132IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.4E-10107132IPR007087Zinc finger, C2H2
PROSITE profilePS501579.764107134IPR007087Zinc finger, C2H2
SMARTSM003550.26107129IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MGAGMKRARE EEPTVPLALS LSTDSASSAV TSADSGAAGP AKRRRGVVVA TSGEGEFVCK  60
TCGRAFATFQ ALGGHRTSHL RGRHGLELGV GVARAIKERK KREEKQHQCH ICGLGFEMGQ  120
ALGGHMRRHR EEMAPRRADD RWVALLPDQE VAGQQAAADQ PPPVLLELFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU4082244e-81EU408224.1 Triticum aestivum C2H2 zinc finger protein (ZFP34) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198432.11e-120zinc finger protein ZAT12-like
TrEMBLA0A3B6N0M31e-118A0A3B6N0M3_WHEAT; Uncharacterized protein
TrEMBLA0A453M9L91e-118A0A453M9L9_AEGTS; Uncharacterized protein
STRINGTraes_5DL_90F570468.71e-119(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46070.12e-19C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]