PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5DL_AB989ABB3.1

Common Name

ZFP2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 52aa MW: 5783.58 Da PI: 7.5844

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5DL_AB989ABB3.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.6e-05	10	32	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F L H+r+H Traes_5DL_AB989ABB3.1 10 HQCHVCGLEFEMGQALGGHMRRH 32 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.1E-7	7	36	No hit	No description
Pfam	PF13912	6.1E-12	9	35	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.681	10	37	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	12	32	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 52 aa Download sequence Send to blast
NKATDQKQAH QCHVCGLEFE MGQALGGHMR RHREQEAATT AQAPPVLLQL FV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU253554	2e-83	EU253554.1 Triticum aestivum C2H2 zinc finger protein (ZFP2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020198422.1	7e-31	zinc finger protein ZAT8-like
Refseq	XP_020199617.1	7e-31	zinc finger protein ZAT8-like
TrEMBL	A0A3B6N1C0	2e-29	A0A3B6N1C0_WHEAT; Uncharacterized protein
TrEMBL	A0A453M9S3	2e-29	A0A453M9S3_AEGTS; Uncharacterized protein
TrEMBL	A9LRT1	2e-29	A9LRT1_WHEAT; C2H2 zinc finger protein
TrEMBL	M8C3W9	1e-29	M8C3W9_AEGTA; Zinc finger protein 1
STRING	EMT32000	2e-30	(Aegilops tauschii)
STRING	Traes_5DL_AB989ABB3.1	6e-31	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1305	30	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46080.1	3e-13	C2H2 family protein

Publications ? help Back to Top
Kam J,Gresshoff PM,Shorter R,Xue GP The Q-type C2H2 zinc finger subfamily of transcription factors in Triticum aestivum is predominantly expressed in roots and enriched with members containing an EAR repressor motif and responsive to drought stress. Plant Mol. Biol., 2008. 67(3): p. 305-22 [PMID:18347915]