PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_C588E74B5.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SBP
Protein Properties Length: 49aa    MW: 5869.74 Da    PI: 12.0952
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_C588E74B5.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP73.82.9e-231364176
                           EE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                    SBP 41 rfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76
                           rfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+
  Traes_5DL_C588E74B5.1  1 RFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 36
                           9*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1036121.67E-20141IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.109.7E-11123IPR004333Transcription factor, SBP-box
PROSITE profilePS5114119.649136IPR004333Transcription factor, SBP-box
PfamPF031103.2E-15135IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 49 aa     Download sequence    Send to blast
RFCQQCSRFH QLPEFDQGKR SCRRRLAGHN ERRRKPPPGP MSTRYGRLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-161355084squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0379384e-38BT037938.1 Zea mays full-length cDNA clone ZM_BFb0203K20 mRNA, complete cds.
GenBankBT0840894e-38BT084089.1 Zea mays full-length cDNA clone ZM_BFb0073B10 mRNA, complete cds.
GenBankKJ7268234e-38KJ726823.1 Zea mays clone pUT3362 SBP transcription factor (SBP23) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188000.14e-27squamosa promoter-binding-like protein 17 isoform X1
RefseqXP_020188001.14e-27squamosa promoter-binding-like protein 17 isoform X2
SwissprotA3C0571e-24SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLA0A287RS706e-26A0A287RS70_HORVV; Uncharacterized protein
TrEMBLA0A287RSE76e-26A0A287RSE7_HORVV; Uncharacterized protein
TrEMBLA0A287RSG83e-26A0A287RSG8_HORVV; Uncharacterized protein
TrEMBLA0A287RSH36e-26A0A287RSH3_HORVV; Uncharacterized protein
TrEMBLA0A287RSI43e-26A0A287RSI4_HORVV; Uncharacterized protein
TrEMBLA0A287RSJ56e-26A0A287RSJ5_HORVV; Uncharacterized protein
TrEMBLA0A287RSL45e-26A0A287RSL4_HORVV; Uncharacterized protein
TrEMBLA0A453L4R93e-27A0A453L4R9_AEGTS; Uncharacterized protein
STRINGTraes_5BL_96D5EA4EE.11e-26(Triticum aestivum)
STRINGTraes_5DL_C588E74B5.17e-28(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.14e-22squamosa promoter binding protein-like 9
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]