PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5DL_D1D0CA79E.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 318aa MW: 35606.6 Da PI: 6.4195

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5DL_D1D0CA79E.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	124	1.3e-38	7	103	33	128
NAM 33 vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgekt 119 +i+ev+iyk++PwdLp k+ +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++ls+ +e +g+kk Lvfy+g+ pkg+kt Traes_5DL_D1D0CA79E.1 7 IIAEVNIYKCNPWDLPGKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKAILSTpANESIGVKKALVFYRGKPPKGVKT 94 699***********8777899**********************************9988899**************** PP NAM 120 dWvmheyrl 128 dW+mheyrl Traes_5DL_D1D0CA79E.1 95 DWIMHEYRL 103 *****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	48.35	1	131	IPR003441	NAC domain
SuperFamily	SSF101941	2.22E-48	2	131	IPR003441	NAC domain
Pfam	PF02365	4.8E-15	22	103	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MPSPVPIIAE VNIYKCNPWD LPGKALFGEN EWYFFSPRDR KYPNGARPNR AAGSGYWKAT 60 GTDKAILSTP ANESIGVKKA LVFYRGKPPK GVKTDWIMHE YRLTAADNRT TKRRGSSMRL 120 DDWVLCRIHK KCGNLPNFSS SDQEQEHEQE SSTVEDSQNN HTVSSPKSEA FDGDGDDQLQ 180 LQQFRPMAIA KSCSLTDLLN TVDYAALSHL LLDGAGASSS DAGADYQLPP ENPLIYSQPP 240 WQQTLHYNNN NGYVNNDTID VPQLPEAHVD DYGMNGDRYN GMKRKRSSGS LYCSQLQLPA 300 DQYSGMLIHP FLSQQLHM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-58	4	131	43	168	Stress-induced transcription factor NAC1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269\|PubMed:29760199}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269\|PubMed:29760199}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ022842	0.0	DQ022842.1 Triticum aestivum NAC domain transcription factor (NAC69-2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020166974.1	0.0	NAC transcription factor 29-like
Swissprot	K4BWV2	8e-69	NAP1_SOLLC; NAC domain-containing protein 1
TrEMBL	A0A453KCW3	0.0	A0A453KCW3_AEGTS; Uncharacterized protein
STRING	EMT14095	0.0	(Aegilops tauschii)
STRING	Traes_5DL_D1D0CA79E.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3803	37	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	2e-65	NAC-like, activated by AP3/PI

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]