PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_EFE6EFEDF.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 215aa    MW: 24015.6 Da    PI: 11.3394
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_EFE6EFEDF.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like94.77e-30152455
                G2-like  4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                           +rWt+ LH+rF++av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Traes_5DL_EFE6EFEDF.1  1 MRWTTALHARFMHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 52
                           79*************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.23E-14152IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-26152IPR009057Homeodomain-like
TIGRFAMsTIGR015578.8E-23152IPR006447Myb domain, plants
PfamPF002492.2E-7151IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MRWTTALHAR FMHAVQLLGG HERATPKSVL ELMNVKDLTL AHVKSHLQMY RTVKGTDRSS  60
HVATGEQQMV VVDAGGRGCG GGGGGGVVAM LAACDVDMAG FCGAPAXXXX XXRRLPRRLV  120
PLRISSVRQQ QERQQLQRLH WWHWYRRLLL HPSPRGMSGC PQTSLINLFR LLLIRGLYTP  180
FLNANFLLLL LKFVSNANLC TSGRFLEPVS LQVND
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-16154457Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-16154457Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-16154457Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-16154457Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17482GGRGCGGGG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3741181e-139AK374118.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3054O18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGTraes_5DL_EFE6EFEDF.11e-151(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65543750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.24e-32G2-like family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]