PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_F269EF70D.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 133aa    MW: 14530.8 Da    PI: 10.3996
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_F269EF70D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000144062123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C+ Cg+sF++   L  H  +H
  Traes_5DL_F269EF70D.1 40 FVCKTCGRSFPSFQALGGHRTSH 62
                           89**********99998888777 PP
2zf-C2H2130.0003191113123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C+ Cg  F     L  H+r+H
  Traes_5DL_F269EF70D.1  91 HQCHVCGLEFELGQALGGHMRRH 113
                            79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.3E-114064IPR007087Zinc finger, C2H2
SuperFamilySSF576675.17E-740113No hitNo description
PROSITE profilePS5015710.4084067IPR007087Zinc finger, C2H2
SMARTSM003550.0864062IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
PfamPF139121.3E-990116IPR007087Zinc finger, C2H2
PROSITE profilePS501579.51591118IPR007087Zinc finger, C2H2
SMARTSM003550.2791113IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MVSSMKHCRD QAEVPLSLSL SLGVVADRNK KMRRSADGEF VCKTCGRSFP SFQALGGHRT  60
SHLRGRHGLA LSLAQGSEPA TKKATKQNLA HQCHVCGLEF ELGQALGGHM RRHREQEATT  120
MAQAPPVLLQ LFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198420.12e-93zinc finger protein ZAT8-like
SwissprotQ9LX854e-20ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLA0A3B6MZK64e-92A0A3B6MZK6_WHEAT; Uncharacterized protein
STRINGTraes_5DL_F269EF70D.17e-93(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.12e-22C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]