PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_F8AEA5040.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 211aa    MW: 23111.8 Da    PI: 5.7636
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_F8AEA5040.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00015164183120
                            EEETTTTEEESSHHHHHHHH CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                            + Cp C k+Fsr  nL+ H+
  Traes_5DL_F8AEA5040.1 164 FACPVCCKTFSRYNNLQMHM 183
                            78*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.81E-6155186No hitNo description
Gene3DG3DSA:3.30.160.609.3E-7164183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.284164191IPR007087Zinc finger, C2H2
PROSITE patternPS000280166186IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MSNPYTFLRP HIDRPFFPFQ RSLVSPSSPP KQALPLLSLL PSSHDHSKIF GCGYAGDDDH  60
HQLKKEDEDV NISLQIGPAN PNPAPNLLRS TVSDGGCDDA TGTAQDQCGG GDHSRANEQE  120
EVEDDDDDAA GDGLCLEYFA AGKLTKGKYW IPTPAQILIG PTHFACPVCC KTFSRYNNLQ  180
MHMWGHGSQY RRGPDSLRGT QPAAMLRLPC F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3594100.0AK359410.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1096E11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169205.11e-155zinc finger protein WIP2-like
TrEMBLA0A3B6MQH81e-154A0A3B6MQH8_WHEAT; Uncharacterized protein
TrEMBLA0A453KJN31e-154A0A453KJN3_AEGTS; Uncharacterized protein
STRINGTraes_5DL_F8AEA5040.11e-157(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.14e-38C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]