PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_FC7D15A05.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 566aa    MW: 66999.8 Da    PI: 8.7035
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_FC7D15A05.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR181.71.3e-2521114291
                   FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleH 85 
                            fYn+Y+ e GFsvr+s+ +    n +i+ r+fvCs+eg ree++ k   ++++rr+r+ tr+gCkakl++ +++ +g+w v+++  eH
  Traes_5DL_FC7D15A05.1  21 FYNKYGLEKGFSVRRSYVEWDGSNCHIILRKFVCSREGVREEKHMKrkmEDRKRRPRSITRVGCKAKLVIARQEeTGQWFVKDFIDEH 108
                            ******************************************999888889999******************999************* PP

                   FAR1  86 nHelap 91 
                            nH+lap
  Traes_5DL_FC7D15A05.1 109 NHPLAP 114
                            ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-2321114IPR004330FAR1 DNA binding domain
PfamPF105519.7E-35235329IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MMEYYHIANK MFNSEDEGYT FYNKYGLEKG FSVRRSYVEW DGSNCHIILR KFVCSREGVR  60
EEKHMKRKME DRKRRPRSIT RVGCKAKLVI ARQEETGQWF VKDFIDEHNH PLAPRDLSCL  120
LRSHRRISDE QKADIADMEK SGIRKHLIMD IMCMQYGGYD EVGCIMRDIY NFCHANKQET  180
ISSGDAQTVI NHMVARQEQD SDFFFRYLVD EAGHLKGLFW CDSQSRLDYE AFGDVIVFYS  240
TYRTNKYNLP FVSFVGLNHH RSTIIFACGI ISHETSQAYE WMLRTFSDAM GQKHPISVIT  300
DGDLAMQRAI RLVWPDSNHR LCMWHIQQNI VRHLHDDAVK EEFRSFIYDT SSIEEHERKW  360
LHFLQRNKVT SEDSWLHQMY KMRKLWCAPY LEGRCFLGLS SNQRSESLNS VLHTHLEAKM  420
TLFQMLEHYE RCLASRRLNE ALQDVEALQF VPFIEENASV LEKHAAKVFT HAVFKLVLWS  480
IDAVKNVRSE RYLMQQRLPH TLCLRRKEWI KRSKCTRSRR KVCFAVSVVL AANWNAQAHH  540
VPTYFTYWEF YKKKHCPGVV FPLGGQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17075DRKRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162107.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A453E7V50.0A0A453E7V5_AEGTS; Uncharacterized protein
STRINGTraes_5DL_FC7D15A05.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-90FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]