PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DS_19B90732F.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 174aa    MW: 18546.7 Da    PI: 10.2502
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DS_19B90732F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.66.8e-29104154252
                G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 
                            pr+rWt+ LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ 
  Traes_5DS_19B90732F.1 104 PRMRWTTALHAHFVQAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQH 154
                            9*************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.9E-26100156IPR009057Homeodomain-like
SuperFamilySSF466893.76E-14101154IPR009057Homeodomain-like
TIGRFAMsTIGR015578.8E-22104154IPR006447Myb domain, plants
PfamPF002491.2E-6105153IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MATAADAPDL SLHISPPSPT GKAGSGRGHE MAISAESTEL CLGFDMATAR QPGEVRNGHS  60
DLEQRLHQPS QIPRFKKSSA DSQAGSSGGA ARSGNGGKKS SRAPRMRWTT ALHAHFVQAV  120
QLLGGHERAT PKSVLELMNV KDLTLAHVKS HLQHSKTEQE DSLSFSPAAN HFRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-16105157456Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-16105157456Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-16105157355Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-16105157355Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-16105157355Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-16105157355Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-16105157456Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-16105157456Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-16105157456Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-16105157456Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-16105157456Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-16105157456Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:19054366, ECO:0000269|PubMed:20444210}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189915.11e-107probable transcription factor RL9
SwissprotQ9FJV56e-30KAN4_ARATH; Probable transcription factor KAN4
TrEMBLA0A3B6JEG71e-108A0A3B6JEG7_WHEAT; Uncharacterized protein
STRINGTraes_5DS_19B90732F.11e-124(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37423168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.22e-30G2-like family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  3. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  4. Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA
    Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS.
    Plant Physiol., 2016. 172(4): p. 2403-2415
    [PMID:27794102]