PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DS_446974FE9.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 111aa    MW: 12898.9 Da    PI: 10.4443
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DS_446974FE9.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM110.91.4e-34219851129
                    NAM  51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                            ++ + kewyf+s +d+kyatg+r+nrat sgyWkatgkd+ v + +g+lvg++ktLvfy+grapkg+kt+Wvmheyrle
  Traes_5DS_446974FE9.2  21 ASVGGKEWYFYSLKDRKYATGQRTNRATVSGYWKATGKDRVVAR-RGALVGMRKTLVFYQGRAPKGRKTEWVMHEYRLE 98 
                            445789**********************************9999.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100536.3591111IPR003441NAC domain
PfamPF023658.4E-161697IPR003441NAC domain
SuperFamilySSF1019412.62E-3422102IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
LYLSLPCWYL YIIFHFLSVT ASVGGKEWYF YSLKDRKYAT GQRTNRATVS GYWKATGKDR  60
VVARRGALVG MRKTLVFYQG RAPKGRKTEW VMHEYRLEGA HEQASKVISC H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-30179762142NO APICAL MERISTEM PROTEIN
1ut4_B6e-30179762142NO APICAL MERISTEM PROTEIN
1ut7_A6e-30179762142NO APICAL MERISTEM PROTEIN
1ut7_B6e-30179762142NO APICAL MERISTEM PROTEIN
3swm_A6e-30179765145NAC domain-containing protein 19
3swm_B6e-30179765145NAC domain-containing protein 19
3swm_C6e-30179765145NAC domain-containing protein 19
3swm_D6e-30179765145NAC domain-containing protein 19
3swp_A6e-30179765145NAC domain-containing protein 19
3swp_B6e-30179765145NAC domain-containing protein 19
3swp_C6e-30179765145NAC domain-containing protein 19
3swp_D6e-30179765145NAC domain-containing protein 19
4dul_A6e-30179762142NAC domain-containing protein 19
4dul_B6e-30179762142NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7712861e-146KC771286.1 Triticum aestivum cultivar Suwon11 NAC transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198650.13e-58NAC domain-containing protein 21/22-like isoform X1
RefseqXP_020198651.13e-58NAC domain-containing protein 21/22-like isoform X2
SwissprotQ84TE64e-44NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A088AX649e-62A0A088AX64_WHEAT; NAC transcription factor 6C
TrEMBLA0A446TVD99e-62A0A446TVD9_TRITD; Uncharacterized protein
STRINGTraes_5DS_446974FE9.21e-77(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2755535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.15e-47NAC domain containing protein 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  6. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  7. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]