PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DS_4859AC7D7.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 111aa    MW: 13184.2 Da    PI: 8.7778
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DS_4859AC7D7.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.82.1e-094365325
                           S---SGGGGTS--TTTTT-SS-S CS
                zf-CCCH  3 telCrffartGtCkyGdrCkFaH 25
                           +e+C++++  G Ck+G++C++ H
  Traes_5DS_4859AC7D7.2 43 QEECKYYSTPGGCKFGESCRYLH 65
                           699*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.454068IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-64469IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-64465IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-64667IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MEAMQFKIAD ETEKGFYLKK FKETEQKVAK EKRKETVSEG SAQEECKYYS TPGGCKFGES  60
CRYLHYEGKE RKTEVAKVEL NFLGLPLRPV SYIHFFNLYP WVRLTHILLF W
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3705171e-124AK370517.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2111P01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179367.11e-54zinc finger CCCH domain-containing protein 65-like isoform X4
SwissprotQ2QTY24e-29C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLA0A446SVV73e-75A0A446SVV7_TRITD; Uncharacterized protein
TrEMBLA0A446U0P73e-75A0A446U0P7_TRITD; Uncharacterized protein
STRINGTraes_5BS_735791EC5.26e-76(Triticum aestivum)
STRINGTraes_5DS_4859AC7D7.26e-77(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79283548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.16e-13C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]