PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DS_4C00D348F.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 136aa    MW: 14619.7 Da    PI: 11.6021
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DS_4C00D348F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000454264123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           + C+ C++sF++   L  H  +H
  Traes_5DS_4C00D348F.1 42 FMCKTCDRSFPTFQALGGHRTSH 64
                           89**********99998888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.9E-54168No hitNo description
PROSITE profilePS501579.644269IPR007087Zinc finger, C2H2
PfamPF139121.5E-104366IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
PfamPF139121.5E-795117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MTKHQRAPAD QLVSLSLSLS LGAVADRNSK RTRRAAAAGG EFMCKTCDRS FPTFQALGGH  60
RTSHLRGRHG LALALAGTGP EPRKATDQKQ GRQRHVCGQG FEMGQALGGH MRRHREQEAA  120
ATAVAQAPPV LLELFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8787781e-159EU878778.1 Hordeum vulgare subsp. vulgare Adf2 (Rpg4), RGA1, NBS-LRR-S/TPK stem rust resistance protein (Rpg5), and ADF3 genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149186.17e-75zinc finger protein ZAT8-like
TrEMBLA0A3B6ML551e-92A0A3B6ML55_WHEAT; Uncharacterized protein
STRINGTraes_5DS_4C00D348F.12e-93(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.14e-15C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]