PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DS_5DEA5C9E3.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 497aa    MW: 52829 Da    PI: 8.1601
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DS_5DEA5C9E3.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.11.4e-31229285259
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            dDgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkve+++ d+++ ei+Y+g+Hnh+
  Traes_5DS_5DEA5C9E3.1 229 DDGYNWRKYGQKVVKGSDCPRSYYKCTHPSCPVKKKVEHAE-DGQISEIIYKGKHNHQ 285
                            8**************************************99.***************8 PP
2WRKY1084.6e-34385443159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k++er+++dpk+v++tYeg+Hnhe
  Traes_5DS_5DEA5C9E3.1 385 LDDGYRWRKYGQKVVKGNPHPRSYYKCTFAGCNVRKHIERASSDPKAVITTYEGKHNHE 443
                            59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-28225287IPR003657WRKY domain
SuperFamilySSF1182905.1E-25227287IPR003657WRKY domain
SMARTSM007741.1E-33228286IPR003657WRKY domain
PfamPF031062.8E-24229285IPR003657WRKY domain
PROSITE profilePS5081123.192229287IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.5E-37371445IPR003657WRKY domain
SuperFamilySSF1182902.88E-29377445IPR003657WRKY domain
PROSITE profilePS5081137.413380445IPR003657WRKY domain
SMARTSM007747.0E-40385444IPR003657WRKY domain
PfamPF031064.1E-26386443IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MSARPPPPPR PRLSLPPRST GESLFSGTGD ASPGPLTLAS ALFPSDADAD AGGGGGGSGA  60
SSGAGPTSFT QLLIGSLSQP PPHQQQQQQQ ERGRGGVARA GPALSVAPPA GAAVFTVPPG  120
LSPSGFFDSP GLIFSPAMGG FGMSHQQALA QVTAQASHSP HRMFDHTEQP SFSAAATSSG  180
ALQNMSSAAN VAEMSEMATT ISNNEHAAFQ SAEASHRYQV PAPVDKPADD GYNWRKYGQK  240
VVKGSDCPRS YYKCTHPSCP VKKKVEHAED GQISEIIYKG KHNHQRPPNK RAKDGSSSAA  300
EQNEQSNDTA SGLSGVRRDQ EAVYGMSEQL SGLSDGDDKD DGESRPNEVD DRENDCKRRN  360
IQISSQKALT ESKIIVQTTS EVDLLDDGYR WRKYGQKVVK GNPHPRSYYK CTFAGCNVRK  420
HIERASSDPK AVITTYEGKH NHEPPVGRGS NQNGGNSNRS QQKGPNSMSS NQASHTGTDL  480
GNIKQGQIGV LQFKREE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-38229445877Probable WRKY transcription factor 4
2lex_A1e-38229445877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX2168400.0JX216840.1 Hordeum vulgare WRKY61 protein (WRKY61) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168255.10.0probable WRKY transcription factor 4
SwissprotQ9ZQ701e-124WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A3B6MN800.0A0A3B6MN80_WHEAT; Uncharacterized protein
STRINGTraes_5DS_5DEA5C9E3.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-113WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]