PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DS_643EDFE5B.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TCP
Protein Properties Length: 295aa    MW: 31958.4 Da    PI: 7.2328
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DS_643EDFE5B.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP106.93.2e-3336162189
                    TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................ssss 69 
                            aag+kdrhsk+ T++g+RdRR+Rls+++a++f+d+qd+LG+d++sk+ieWL+q+a +ai+ l+++                   s   
  Traes_5DS_643EDFE5B.2  36 AAGGKDRHSKVVTSRGLRDRRIRLSVQTAIQFYDIQDRLGVDQPSKAIEWLIQAAATAIDGLPSLdcsfalpvaspaaedaaevS--- 120
                            6899*************************************************************88887776333322222220... PP

                    TCP  70 aseceaesssssasnsssg..................................k 89 
                                       +++  s+g                                   
  Traes_5DS_643EDFE5B.2 121 -----------TSE-TSKGsvlslangpadndnathqanaynggsangtfaelL 162
                            ...........222.222223333333333333333333444444445555552 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.3E-3438168IPR005333Transcription factor, TCP
PROSITE profilePS5136930.8193997IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEEADKDRNS CKRLRAVGGG GDSADAWRTF RVARAAAGGK DRHSKVVTSR GLRDRRIRLS  60
VQTAIQFYDI QDRLGVDQPS KAIEWLIQAA ATAIDGLPSL DCSFALPVAS PAAEDAAEVS  120
TSETSKGSVL SLANGPADND NATHQANAYN GGSANGTFAE LLHCSNAADK PMQHQHQQPT  180
LAYYAAPGSH IAPMSFEMIP QLTFSQDQQH RHHHHHHASV AFDRSTLQSN TVSTPQWPPS  240
QHPFLMQRFS AAPAEPSPMF PFFLGGNSAS AAAPAAANAP ERRLQLWDFK EERKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-224498155Putative transcription factor PCF6
5zkt_B4e-224498155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183767.10.0transcription factor PCF8-like
RefseqXP_020183769.10.0transcription factor PCF8-like
SwissprotA2ZMR91e-85PCF8_ORYSI; Transcription factor PCF8
TrEMBLA0A3B6MKJ80.0A0A3B6MKJ8_WHEAT; Uncharacterized protein
TrEMBLA0A453JL120.0A0A453JL12_AEGTS; Uncharacterized protein
STRINGTraes_5DS_643EDFE5B.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115532638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.22e-32TCP family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]