PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DS_976CBF9EB.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 1114aa    MW: 125311 Da    PI: 7.1901
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DS_976CBF9EB.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000639951018122
                             EEET..TTTEEESSHHHHHHHHHH CS
                zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt 22  
                             ++C    C++sF+++ +L  H r 
  Traes_5DS_976CBF9EB.2  995 FPCDieGCDMSFNSQQDLLLHKRD 1018
                             789999***************985 PP
2zf-C2H210.70.001610781104123
                             EEET..TTTEEESSHHHHHHHHHH..T CS
                zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                             y+C    Cg++F+  s++ rH r+  H
  Traes_5DS_976CBF9EB.2 1078 YECMvpGCGQTFRFVSDFSRHKRKtgH 1104
                             788888****************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003559.69951017IPR015880Zinc finger, C2H2-like
SMARTSM003551510181042IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9710181047IPR007087Zinc finger, C2H2
PROSITE patternPS00028010201042IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.8E-410201046IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.602.6E-1010471072IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.001610481072IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.40610481077IPR007087Zinc finger, C2H2
PROSITE patternPS00028010501072IPR007087Zinc finger, C2H2
SuperFamilySSF576671.22E-1010581101No hitNo description
Gene3DG3DSA:3.30.160.602.2E-1010731101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.2410781104IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.13610781109IPR007087Zinc finger, C2H2
PROSITE patternPS00028010801104IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1114 aa     Download sequence    Send to blast
MISHYQLLYK LALSLSQREP KDFHTLPRSS RLRDKKKKDE GDTMVKEKFV GSVIENNNLL  60
SILLDKSSCI IVPETPFPPT SFPTMMKPEL TVKQSLTGGH CSISQQAVHN MSVDVALDKS  120
IVVENMSHSQ SVTEASLSAY NRRKLYETKY GELGTAAFCL SPSKLQSGVT DKDKRGGLLD  180
QGRLPCVQCG ILSFACVAII QPREAAVQFV LSREGISSSA KPGEVSESDG ISNWITKNIE  240
IVPQQGQASE ALSVSLAHVS DRCGQLYSRN NNGSTSALGL LASTYGSSDS EEESNQGKDN  300
QLLETSVSFS STVQRQRSNS HLYEECCEAK TTTSLLKSIE DNSTTITRCG RDTDINHLAK  360
LREQGTTYDQ CSVYVDLAND LTISGVKAYS DTHVTTAKSS IEPDVLTQLK YNNDSCRMHV  420
FCLEHALGTW TQLQEIGGAN VMLLCHPEYP RAESAAKFIA EELGLKPDWK DVAFEEATDD  480
DIRRIQLALH DEDAEPASSD WAVKMGINIY YSAKQSKSPL YSKQIPYNSI IYEAFGQENP  540
DNLTDYGRQR SGVTKKRVAG CWCGKVWMSN QVHPFLVREH EEHNRAIVCS KVMLGANYHE  600
IVYDEPSLTC NTMVDCSPSK RISRRKGRDS IEKSGARKKR CSANDEAILH CSSLGMNSKT  660
ISDQPRNFDD HDKHEGGKIT EAPSTQQYQQ YTLQSMNMKS SSNKPKDDKG NRNFLDLYDE  720
ANDVDCWFNI DSGDNAAIRH LEDSRQQELG TVKAKSPGKL QGNMRKSSKC KARDDSLNGD  780
KKVQKMNKKS ISRKQKDVEI NTQFREEYEG DNNWEEVPEG KDHDVKEESR AKTRNGEDDK  840
RNNNSHELHD EDNDMDCWHD IQGGDNATMG NLDNSPVQRL EAAEVKSGGK LHCCKRKPSK  900
GKAKDDYSNG DERLQMLNIE SISRKQKSDS QFDEGCDRDN ALNSLLNDVD EATRENCYEV  960
REEEMDGMEV KPRGKVQTGK RKTSRCQAGD KAAKFPCDIE GCDMSFNSQQ DLLLHKRDIC  1020
PVKGCKKKFF CHKYLLQHRK VHMDERPLNC EWKGCKKTFK WPWARTEHMR VHTGVRPYEC  1080
MVPGCGQTFR FVSDFSRHKR KTGHSSGKKN KEST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A9e-57992111220140Lysine-specific demethylase REF6
6a58_A9e-57992111220140Lysine-specific demethylase REF6
6a59_A9e-57992111220140Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13238RDKKKKD
2623639RRKGRDSIEKSGARKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201011.10.0lysine-specific demethylase JMJ705-like
TrEMBLA0A453K6010.0A0A453K601_AEGTS; Uncharacterized protein
STRINGTraes_5DS_976CBF9EB.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67183035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.19e-77relative of early flowering 6
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]