PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_13895C140.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 260aa    MW: 29385.9 Da    PI: 8.1289
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_13895C140.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.11.6e-11141182351
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                             +GV++  k+ +W A I++      +k+++lg+ gt +eAa+++++a+ 
  Traes_6AL_13895C140.1 141 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQDEAARLYDRAAF 182
                            79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.966116195IPR001471AP2/ERF domain
SMARTSM003801.3E-4140197IPR001471AP2/ERF domain
PfamPF008479.0E-6140183IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-8140185IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-6143187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MYGEHVLLSG ISNCELIAAG TSTAVKNNFG RNCWYRHDGT IIGRDVTQYF CSKVCNGKDS  60
LPVDLPKPVE NEKHGEVEHA NVNPLSVHPL PLTRTSDVLP ESSNGSDSLK EEKNQYYPGK  120
EIKRRKRHRR KQYVDQEPCI MRGVYFKNMK WQAAIKVDKK QIHLGTVGTQ DEAARLYDRA  180
AFMCGREPNF ELSEEEKNEL VKYTWDDFLA ITRNTITSKK QRKVGSRRHN KADLFIGDTE  240
MVNGGGSSNS DDGDVDTSVS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2501020.0AK250102.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf64c22, mRNA sequence.
GenBankAK3645620.0AK364562.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2026I07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197934.11e-151ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A3B6NQ380.0A0A3B6NQ38_WHEAT; Uncharacterized protein
TrEMBLA0A446VE300.0A0A446VE30_TRITD; Uncharacterized protein
STRINGTraes_6AL_13895C140.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75163545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.22e-44ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]