PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_2983D4EB6.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family YABBY
Protein Properties Length: 250aa    MW: 26684.3 Da    PI: 8.0257
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_2983D4EB6.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY2207.2e-68192095170
                  YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee....................ll 72 
                            s +eq+Cyv+Cn C+tilav vP +slfk+vtvrCGhC++llsvnl+      aa    + ++ ++                    ll
  Traes_6AL_2983D4EB6.1  19 SPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRALLLPPAAPPANQLQFGHSllsptsphglldevafqtpsLL 106
                            578********************************************99965555555455555445556899997666665444322 PP

                  YABBY  73 eelkveeenlksnvekeesastsvssekl...........senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdish 149
                             ++ +++ +  +  +++++as+      l           +++++++++ +p ++rPPekrqrvPsaynrfik+eiqrika+nPdi+h
  Traes_6AL_2983D4EB6.1 107 MDQASTNLSGFTGRSNSSCASN------LpampmpaakpaQQETEQSAKSAPSANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITH 188
                            2222222111122222233333......1233447888744555555556677*********************************** PP

                  YABBY 150 reafsaaaknWahfPkihfgl 170
                            reafsaaaknWahfP+ihfgl
  Traes_6AL_2983D4EB6.1 189 REAFSAAAKNWAHFPHIHFGL 209
                            *******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046906.8E-7120209IPR006780YABBY protein
SuperFamilySSF470951.15E-7152202IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.1E-4158201IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MSSSSSSSTV FNLDHLAPSP TEQLCYVHCN CCDTILAVGV PCSSLFKTVT VRCGHCANLL  60
SVNLRALLLP PAAPPANQLQ FGHSLLSPTS PHGLLDEVAF QTPSLLMDQA STNLSGFTGR  120
SNSSCASNLP AMPMPAAKPA QQETEQSAKS APSANRPPEK RQRVPSAYNR FIKDEIQRIK  180
AGNPDITHRE AFSAAAKNWA HFPHIHFGLM PDQGFKRTFK AQDGAEDMLL KDGLYAAAAA  240
AAANMSVTPL
Functional Description ? help Back to Top
Source Description
UniProtSeems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740160.0AB274016.1 Oryza sativa Japonica Group OsYABBY4 mRNA for OsYABBY4 protein, complete cds.
GenBankAK1067840.0AK106784.1 Oryza sativa Japonica Group cDNA clone:002-115-H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155221.10.0protein YABBY 4-like isoform X2
SwissprotA2X7Q31e-127YAB4_ORYSI; Protein YABBY 4
SwissprotQ6H6681e-127YAB4_ORYSJ; Protein YABBY 4
TrEMBLA0A3B6NS390.0A0A3B6NS39_WHEAT; Uncharacterized protein
STRINGTraes_6AL_2983D4EB6.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.11e-59YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Yang C,Ma Y,Li J
    The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.
    J. Exp. Bot., 2016. 67(18): p. 5545-5556
    [PMID:27578842]