PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_393A90DDD.3
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 239aa    MW: 25985 Da    PI: 8.2174
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_393A90DDD.3genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0017114138123
                            EEETTTT..EEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCg..ksFsrksnLkrHirtH 23 
                            y C+ Cg  k+F    +L+ H+r +
  Traes_6AL_393A90DDD.3 114 YACERCGgkKRFAVLADLRGHLRHC 138
                            89********************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MCFPKNPPRA TMSWSSMPTN CSRSMSTSAI YAARASAATP TLGCTCVRTA TDSRPWTRSP  60
GPVRQSQLMA AMCAFPVLSR GATGTVRTAA SGRXXXXXXX XXXHFRRSHC PKLYACERCG  120
GKKRFAVLAD LRGHLRHCGE EAQWRCSCGT TFSRKDKLFG HLALFEGHMP AMSPPNKDAV  180
TTTTEAPLDI MDEGGIEEQE DGGEGGFDPE FFKEWMEELK DDGVPAGGTI WPGRAAAGQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0713207e-62AK071320.1 Oryza sativa Japonica Group cDNA clone:J023088A12, full insert sequence.
GenBankAP0056997e-62AP005699.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0046L23.
GenBankAP0149587e-62AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126107e-62CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175848.14e-98zinc finger protein STAR3-like
RefseqXP_020175849.14e-98zinc finger protein STAR3-like
TrEMBLA0A3B6NQ955e-97A0A3B6NQ95_WHEAT; Uncharacterized protein
TrEMBLA0A446VEG55e-97A0A446VEG5_TRITD; Uncharacterized protein
STRINGTraes_6AL_393A90DDD.31e-167(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125503236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.32e-25C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]