PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_3DEF1B023.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 367aa    MW: 38177.3 Da    PI: 8.4226
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_3DEF1B023.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00063144166123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            y+C+ C+k+F++   L  H  +H
  Traes_6AL_3DEF1B023.1 144 YECKTCNKCFPTFQALGGHRASH 166
                            99**********99999998887 PP
2zf-C2H211.60.00086250272123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C++Cg  F +   L  H+r+H
  Traes_6AL_3DEF1B023.1 250 HECSICGAEFASGQALGGHMRRH 272
                            78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.2E-11143168IPR007087Zinc finger, C2H2
SuperFamilySSF576671.46E-8143166No hitNo description
SMARTSM003550.094144166IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097144171IPR007087Zinc finger, C2H2
PROSITE patternPS000280146166IPR007087Zinc finger, C2H2
SuperFamilySSF576671.46E-8245272No hitNo description
PfamPF139121.6E-12249273IPR007087Zinc finger, C2H2
SMARTSM003550.016250272IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.577250272IPR007087Zinc finger, C2H2
PROSITE patternPS000280252272IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MQASAMELVL FREEGAVDDR LQQRGGAVVK RKRTKRPRHQ TPPVAAMACS SASSSESTTT  60
EEEDMAHCLI LLAQGAAPPG VVVDSRPPPA TVPQEARQGT SSLPPAGPLP APAVVSAKTE  120
RYTSRKYTEA ATTADGVRAG FYVYECKTCN KCFPTFQALG GHRASHKKPR LAGADDDSAA  180
NATSVAIAKL SKPPSTKTAT PPLVQMTTAS PPPPPPPQVD AAPDVTTVLS LNNGGSAVCH  240
AVNTNRLRVH ECSICGAEFA SGQALGGHMR RHRPLHAPAD RAIATTAVTA IAASTTKKEK  300
DSTPAGINLE LDLNLPAPSD EECVSHPPPP PPPSSAPPVV LGLGPFDSGK KRLMLTAASA  360
ALVDCHY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039892e-75AP003989.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1063_D06.
GenBankAP0040262e-75AP004026.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1136_C04.
GenBankAP0149582e-75AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126102e-75CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158166.10.0zinc finger protein ZAT5-like
TrEMBLA0A3B6NX230.0A0A3B6NX23_WHEAT; Uncharacterized protein
STRINGTraes_6AL_3DEF1B023.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.13e-37C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]